YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32192
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLIFFFLKL AIFETLFWNL SYIFKHFQNF FGILTQLLAT VKNSEAFLAH FRGLLTFLKI  60
   61 TGDKMFGFNP AEMLKIFKNS AVFEKKTQLF ETMGVLLMTT VSFFLKTRLK KFQIFLPTKN 120
  121 PSACNLASLK TFTEAYTTCC FYFQSAIFFW IGRKMENGNN VANCQKFIFC FLSVYISRIF 180
  181 QENLYSTTTT YTSISLFSLS LFPFTFPFSI PYFLFSYKFP SFCRNIHTIP NCKEKTQKTV 240
  241 RKWTTLKTGS TEQCPAFTEI EINIIIIYPY SSDKDDPGKQ HVHDDVIFAP APLDPAKIDK 300
  301 DFECLVKELG LNEEKQQEMH NYSMEKKMSL LVSQHCLQTE DASHFIGFLK NLQQSFVIDS 360
  361 NTIRQLQELK EPSENSLLEE HAFVPNLLLL IIPNFDILEL KKNVFTLGRL CQRACLPACL 420
  421 PPKIDRYSYL ESFISSSGLK LLTELLNQCH QQYTLEQPAL FFLYALRALL NSPVS

Type	Start	End	Confidence
Cytoplasmic	1	5	0.66
Transmembrane Helix	6	24	0.60
Non-Cytoplasmic	25	88	0.56
Transmembrane Helix	89	105	0.50
Cytoplasmic	106	189	0.51
Transmembrane Helix	190	215	0.66
Non-Cytoplasmic	216	475	0.66