YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glc-4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAQLYVSVL LALLVSSTAK KSKTKSCKRT AFSRHTTNYQ AWREQMTVCD LLQDYDAAVR  60
   61 PSGRTPYNDT RGAVMVTTSL NIRSISAVSE KNMEFVAQFR FRQEWYDDRL RFIEHQGLLS 120
  121 SDYRNFEFIH VARDQSLWIP DTFFQNEKNG WYHMLNQENR FLKIRSDGKL IYDRRLTLHL 180
  181 ACSMHLSRYP MDHQNCEIAF ASYAYTTADI EYIWDVPAIQ IHEGANGALP NFEIASFKNA 240
  241 SCTSKTNTGT YSCLKVEIRL NRVFSFFLLQ LYIPSSMLVG VAWVSYWIDW KSTAARVPLA 300
  301 IVTLLTMITT SHAINSNLPP VSYAKSIDIW VGACVVFIFF SLIEYAVVNY VGILDEHRQM 360
  361 KKAACNRSRL SNVIENDNFG ESLQSLTFSP QEKKRLIRRR PKKNMEMQEG DFEAIEMVDR 420
  421 GPPRSAGLME EGWTFHDTTD LVYIGQRKRV ELVRWCSVLS SRGRAERIDI IARIIFPLAF 480
  481 ILFNFAYWSI YLEEEDPDES

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	265	0.99
Transmembrane Helix	266	287	0.91
Cytoplasmic	288	294	0.83
Transmembrane Helix	295	314	0.92
Non-Cytoplasmic	315	328	0.86
Transmembrane Helix	329	353	0.90
Cytoplasmic	354	469	0.99
Transmembrane Helix	470	491	0.92
Non-Cytoplasmic	492	500	0.96