YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32110
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRANDTSSN LKLISLVVLI VQTTALVLTL RYSQTQKSEG PRYLSSTAVV CAEIIKLITC  60
   61 FFVIYRNNGY RFSGMLNELN REIFASPQTR ADSLKVAVPA IMYVIQNNLL FFALKKLDAA 120
  121 TYQVTYQLKI LTTAIFSVTM LGKSLHRYNW MALILLTAGV ALVQYPSGDS TTSKSTAAEH 180
  181 DASDNILGLG AVLAACFSSG FAGVYFEKIL KTSKVSLWIR NIQLAFFSVF GALLVCWLYD 240
  241 WQAISDDGFL RGYNGVIWIV VLLQAYGGLV IALVVKYADN ILKGFAVSLS IILSSFTSWL 300
  301 VLGDLTITTT FAIGATVVIF ATFLYGHEPK STPAEAHNA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.81
Transmembrane Helix	11	32	0.85
Non-Cytoplasmic	33	42	0.75
Transmembrane Helix	43	65	0.82
Cytoplasmic	66	147	0.87
Transmembrane Helix	148	167	0.91
Non-Cytoplasmic	168	185	0.95
Transmembrane Helix	186	206	0.96
Cytoplasmic	207	216	0.92
Transmembrane Helix	217	241	0.83
Non-Cytoplasmic	242	254	0.86
Transmembrane Helix	255	275	0.93
Cytoplasmic	276	280	0.87
Transmembrane Helix	281	302	0.86
Non-Cytoplasmic	303	306	0.78
Transmembrane Helix	307	327	0.90
Cytoplasmic	328	339	0.92