YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	avr-14
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHYRLTTIL LIISIIHSIR AKRKLKEQEI IQRILKDYDW RVRPRGMNAT WPDTGGPVLV  60
   61 TVNIYLRSIS KIDDVNMEYS AQFTFREEWT DQRLAYERYE ESGDTEVPPF VVLATSENAD 120
  121 QSQQIWMPDT FFQNEKEARR HLIDKPNVLI RIHKNGQILY SVRLSLVLSC PMSLEFYPLD 180
  181 RQNCLIDLAS YAYTTQDIKY EWKEKKPIQQ KDGLRQSLPS FELQDVVTDY CTSLTNTGI

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	239	0.99