YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31273
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.87
Transmembrane Helix	56	78	0.86
Non-Cytoplasmic	79	108	0.72
Transmembrane Helix	109	132	0.65
Cytoplasmic	133	175	0.40
Transmembrane Helix	176	200	0.80
Non-Cytoplasmic	201	291	0.60
Transmembrane Helix	292	313	0.92
Cytoplasmic	314	332	0.56
Transmembrane Helix	333	347	0.80
Non-Cytoplasmic	348	348	0.06
Transmembrane Helix	349	363	0.48
Cytoplasmic	364	368	0.37
Transmembrane Helix	369	391	0.73
Non-Cytoplasmic	392	398	0.56
Transmembrane Helix	399	422	0.76
Cytoplasmic	423	440	0.70
Transmembrane Helix	441	463	0.92
Non-Cytoplasmic	464	469	0.60
Transmembrane Helix	470	491	0.94
Cytoplasmic	492	573	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQHQIIPDY YYRSYTPYRG HHFMPGARVG DETEPPAHKK SIISWTSTPT KHKVKYYITC  60
   61 SFLIFLILLV LFIYVCSLAN MSTAFGLLGS RGLGKAIQES PLINDPISAV VVGMLATVVL 120
  121 QSATTTTNIL VTMVAANMIT VHDAIPVMIG SELGSSLVNA MVSLAYSGKP EQFRRAFSAA 180
  181 ILGDVFNVCG LFVIFPMEMF TGLIEKVSWW IVDPLISEQG LSFKTLELLT DPINQVILQV 240
  241 NEVELLNATI RPEMFEANHS FVQRCSFTNG TRIYNCPYNH LFSHTSLSDK NIGWIVLFVS 300
  301 IFCLVMCLKL LDGHAANYVR NLLSKQCPGM WKPCTGYLVM LVGLIQSNSI FSSSLTPLVG 360
  361 SGVVTLEQMY PLVLGSNIGT TFSGVLAAFS TDPSRFEKAL HMAMCQVIYN IIGTCLFYIV 420
  421 PCTRKFPVYL SVKLGVITDH YRWFIVVFIS TVFLIIPFTI IGLTLLPDNV IVIVFIIILI 480
  481 IAITCCFICV LQNSCKEFLP KILHNWSFLP IWMRSLQYYD PFMCKVFTNI PYIGGFFRKG 540
  541 GAHRERTENG KYGEDDIEKK VQKLVQLSGQ TQV