YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oct-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	307	0.60
Transmembrane Helix	308	328	0.81
Cytoplasmic	329	335	0.69
Transmembrane Helix	336	355	0.92
Non-Cytoplasmic	356	361	0.68
Transmembrane Helix	362	383	0.73
Cytoplasmic	384	393	0.83
Transmembrane Helix	394	415	0.90
Non-Cytoplasmic	416	420	0.83
Transmembrane Helix	421	441	0.95
Cytoplasmic	442	508	0.97
Transmembrane Helix	509	530	0.90
Non-Cytoplasmic	531	545	0.94
Transmembrane Helix	546	567	0.90
Cytoplasmic	568	575	0.83
Transmembrane Helix	576	594	0.95
Non-Cytoplasmic	595	600	0.80
Transmembrane Helix	601	622	0.90
Cytoplasmic	623	633	0.79
Transmembrane Helix	634	656	0.86
Non-Cytoplasmic	657	662	0.79
Transmembrane Helix	663	683	0.94
Cytoplasmic	684	757	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQVSSDEP PTEEQELDKE TEVKDDSLPH TLNIENHAVK QPFLASTHLP IRSETDLISN  60
   61 ISASSMMPLE NHPLIYSNPE FTTVRFLTPQ ASVQTVNAGA ASVAPSEASV NAENSRKPSK 120
  121 ARLQSEMEIR NQHYQKQKQY ASTKETRAKR LTDIDFEGIL QLIGGCSYWQ IIVYLIISVQ 180
  181 QVPHAMFNLS VVYMMYQPDH WCKIPFFNEE SFSAELGYTN YTWDQVLNST IAFPRTFNKQ 240
  241 RNELHHDQCH YFERDYVHIK LSPWAQVKDM NATGKINRCK EWEYDTSVMD RTIVTEWNRV 300
  301 CDNNWSRAHV HMSYSLGYLV GCFVGGFISD RYGRKTAITG FGILTMLFGF LLTYSKEFEI 360
  361 FLVVRFLLAA TNEAADLAAY VLCMEVTGTK YRSIVGSLIQ APWACGYAFL ALIAYLTKSW 420
  421 TMIHLICVLL HIISLMLLYF LPESPRWLIL NNKTKQAEKI IREACHYNKS RLPSDLGLVR 480
  481 HAEKKKWMKH NEKPSYFHLF RSSELRFRNV VLFIVWIATA LVYYGMVIAL SDQSSPGRRV 540
  541 FDGNFFLNNA MAGAIELPTL VFCVFLLRMG RKRSQMLVLF GSGLFLLTSV VMVYRKQSTL 600
  601 ALIFMLLSKA CIQGSFNILY IFTSELNPTV VRNSAVGISS MVARMGAGAS GYIAILSDVT 660
  661 MPLVPMTIFA CFSLLAGCLV LLLPETQGLP LPDTILDSVQ MVKRNTKPCG TLSGTFLGGI 720
  721 DDDAQPYGGK LPPRVSSDDE EEEEEEDSEE SIPEKTA