YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31747
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.95
Transmembrane Helix	90	108	0.95
Non-Cytoplasmic	109	117	0.77
Transmembrane Helix	118	137	0.78
Cytoplasmic	138	167	0.78
Transmembrane Helix	168	189	0.87
Non-Cytoplasmic	190	201	0.83
Transmembrane Helix	202	227	0.87
Cytoplasmic	228	241	0.79
Transmembrane Helix	242	262	0.86
Non-Cytoplasmic	263	269	0.72
Transmembrane Helix	270	292	0.92
Cytoplasmic	293	302	0.86
Transmembrane Helix	303	322	0.94
Non-Cytoplasmic	323	332	0.75
Transmembrane Helix	333	354	0.82
Cytoplasmic	355	393	0.91
Transmembrane Helix	394	415	0.91
Non-Cytoplasmic	416	422	0.75
Transmembrane Helix	423	446	0.87
Cytoplasmic	447	460	0.86
Transmembrane Helix	461	484	0.87
Non-Cytoplasmic	485	503	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEHDDFEP IDGVMEAQIP QSTTIDHLIV EGNNNQNNNH NTGDTLSNVI VENWIFAPIA  60
   61 VTIQKMNVSK TNHVFNVAEK ESKKQFLAEA LIPFLFAGLG LILAGVMLES AEGSEFFTTL 120
  121 PDAVIMVPTL VGLKGNLEMT LSSRLSTLAN LGFMESRKDK INVALSNMAL IQCQAIAVSS 180
  181 LAVIPVLFLG EQAISFDDTL CLLLSAVVTA SLASLVLSLL MVAVVIAARR WKLNPDNIST 240
  241 PVAASLGDVS TLYILLTVGT LACHMRDLHV TLLIVILLFF YAIAIVGAVM AAEDRFTLEV 300
  301 LKNGWWPILC AMMITTFSGL VLKKSMQTYP PLAAFQPLIN GLGGNLVAVQ ASRISTQLHR 360
  361 ARKNREIEVR SLQTYINPWR AFFGNNEDAS AAQILLGISV PSNIIFIFII FLFGVGFHNT 420
  421 TPFTISFVLV CAIQVTTLLY ICQILVRAMW IMRIDPDNSA IPFLTALGDL IGSLLLILCF 480
  481 WSQWKYFGLP VSADQYTGHK FGH