YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glb-33
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLTTTISP LYEEHDDPYI NYSLCYTPLH DETYKTFSVI LNGYITTGVI LFGTIGNLNG  60
   61 VKSVHVTSLD KNRGVVLAVS MLALAFWDTV LLWSAFFYYG AKKLNVLNNL YLDRLNTIIP 120
  121 YFHALSHVAN TASIWCVVAI TIQRFMATRD PFRTSRTTVI VQSFRTERRI SFIYCATYRR 180
  181 LFKMPLYVSL CALLFNLPAF FEIRSKSCFN RDTNETLVTL SPTRLRTNPY FTVYRVCSRM 240
  241 LMVSVGPNIL IVCISALTLW FLRGSNRSRR QLFQMTDNLL ERYASRESMN TMISVMLVVK 300
  301 FILFRSLTFF LDIMEVTVVM MDNYYIIDIS NILILVNSAT NCLIYLKATE WLNSRFVERK 360
  361 TIKRKKTICD SGQLLGDRLS ILKSSWEKAN EMTNGEIGVR VAWNMVRKHP NLCKNDEPEK 420
  421 VSLLNGSCKR SIDHAKFQEI GGRITSFISE LLELMQNNQP ESYIVMRIRR VGAVHYDKGI 480
  481 VFTSSVWKEF KHTIQTIISE VQFSSPQERE AALDAWNIFI SFIIREMKMG IWAIGDTIGQ 540
  541 MP

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.72
Transmembrane Helix	40	61	0.68
Cytoplasmic	62	74	0.85
Transmembrane Helix	75	97	0.89
Non-Cytoplasmic	98	123	0.87
Transmembrane Helix	124	146	0.84
Cytoplasmic	147	180	0.95
Transmembrane Helix	181	201	0.84
Non-Cytoplasmic	202	239	0.93
Transmembrane Helix	240	262	0.92
Cytoplasmic	263	288	0.89
Transmembrane Helix	289	309	0.77
Non-Cytoplasmic	310	324	0.78
Transmembrane Helix	325	346	0.79
Cytoplasmic	347	542	0.85