YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31382
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRICAPRH ISIASTSFLN PQNRCETTIS RRNMSALPPA IAPAFQYASD CYIAQSIQFG  60
   61 MESLHGLGLS WPGAFISAAI LLRIGTAPLH IYAEKLFANR LHAQNFLTQG IMKKVSERYR 120
  121 VQLGPSTDGT KLEVKSSDPK IAKATQDALQ EVPAMLAEHG LQAARIQNLK MCTVPVWIFS 180
  181 SFALRNVINS DFHPSVAGHL WIPDMLAPDP YFILPVAVGV FGFLNLYSQR KIYPGVVKMT 240
  241 WKQKSYDGVL AFFTMFAVTI MAQLPACIPL YWLIVSTTGM AQAQMLRHPK IKGIFGIKKL 300
  301 PTDSATPIRD LFKMRNV

Type	Start	End	Confidence
Cytoplasmic	1	33	0.56
Transmembrane Helix	34	48	0.35
Non-Cytoplasmic	49	66	0.63
Transmembrane Helix	67	87	0.79
Cytoplasmic	88	168	0.88
Transmembrane Helix	169	188	0.80
Non-Cytoplasmic	189	209	0.84
Transmembrane Helix	210	228	0.95
Cytoplasmic	229	247	0.91
Transmembrane Helix	248	273	0.87
Non-Cytoplasmic	274	317	0.77