YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31654
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.70
Transmembrane Helix	5	20	0.74
Cytoplasmic	21	38	0.80
Transmembrane Helix	39	57	0.88
Non-Cytoplasmic	58	70	0.85
Transmembrane Helix	71	92	0.91
Cytoplasmic	93	100	0.86
Transmembrane Helix	101	119	0.78
Non-Cytoplasmic	120	125	0.65
Transmembrane Helix	126	148	0.85
Cytoplasmic	149	158	0.74
Transmembrane Helix	159	182	0.86
Non-Cytoplasmic	183	191	0.58
Transmembrane Helix	192	213	0.89
Cytoplasmic	214	239	0.74
Transmembrane Helix	240	260	0.72
Non-Cytoplasmic	261	276	0.88
Transmembrane Helix	277	298	0.91
Cytoplasmic	299	306	0.91
Transmembrane Helix	307	325	0.95
Non-Cytoplasmic	326	331	0.68
Transmembrane Helix	332	353	0.86
Cytoplasmic	354	366	0.77
Transmembrane Helix	367	383	0.92
Non-Cytoplasmic	384	389	0.66
Transmembrane Helix	390	411	0.90
Cytoplasmic	412	432	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVGVFYGLA AVCGLLYFYT RSATESNDDP KFKSFQRTYL IVYMMAVAGD WLQGPHVYAL  60
   61 YESYGMSKHQ IEILFIAGFG SSLLFGTFIG SIADKFGRRN NCLMYAILYG GACITKHFGN 120
  121 MPVLMIGRFL GGIATSILYS AFESWLIFEH NTRGFSDSLL GTVFSNAALG NSLIAIISGV 180
  181 AAQFVAERFG FVAPFDLALS VLLIMAVIIM NTWPENYGNE KAPVKESFQK ATQAIREDPN 240
  241 VFCLGLVQSL FEGSMYTFVL EWTPALSRAA GDVGIPHGYI FAAFMVATMI GSSVFKLLQQ 300
  301 HERPESFMRY VLLLAAVCLS MPIVAPDSLA LVFGGFLVFE MCCGIFWPSM GCLRGTYVSE 360
  361 ETRSTTLNLF RVPLNLIVIF ILWQNFTMIS IFKFCVFFLF AASIAQHALF IRTEHTPRHQ 420
  421 KLPISVEEAE NL