YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	npp-13
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFTEILGR VDHQGFAQLL ANPIFQTNRV GQENSQQFTV RNGVEQELCG ILGGSEGDWT  60
   61 RQTHSVQKQM MFGERGIELP SRQPKSHTAE DTLTDEGVVD VPEAVMDDID EEELDEDISR 120
  121 VKVETDRAFF NHMLLSRPAA VPMNPAQAME RDNLPFGGGK FVNKNISDRR ELIFGDKLHK 180
  181 FLKNQGKKSL VDLMKEAIDE SGTDGALGDV WNDVTSVLNR KTSASRDDLT TTANLVEDAC 240
  241 KYLQAVFTEH MQTVVERNLE VAERGGIPGT RGLVNAFLKV GTEESFQPED DSIDGMPTWQ 300
  301 VTYHCVRAGD MKSASETLNR LKSFPQCATL VAALNHVAKH GKLDSELKKK LKVEWRHNLA 360
  361 HTKDKYKRAI FYVKWTIGIS IFFHCSLAFW TI

Type	Start	End	Confidence
Cytoplasmic	1	370	0.74
Transmembrane Helix	371	390	0.76
Non-Cytoplasmic	391	392	0.80