YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31636
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALILDSVV QADLDRVPGN TTMLRAETWR IIEQFSQSLP TPYSLSSPDN GIHIKSIEWL  60
   61 PTTDENHVVR VVCTSNATLF ELLEPKSPVL SIKPDSLEPF GTTRMSIYMR FPDIYDNYTC 120
  121 VYYDEEEKAW STKGIRRIEH SYHGYVKCET NHFGVFALLP DRLFYNSESF WKDLANHMPT 180
  181 VTSFVTLICT VLLLFMAAVQ KNQPIDCAFL FYLFFVFMIH LAHLLLFLAP QVGEPFTFST 240
  241 LLHFILQFCV IASAGLLCLV TPSIFTFSTY YLLDGRDLDI ARLFERTDWL FISNYLLPTA 300
  301 VLFSISVVYA IWNVYIASGT RTNRRCSSDR LLALGPAISA SVSSLFMVFC FCSALLLFFF 360
  361 REHSPMAIFF FCLFQFFHVV IAFFFASYLF RLRFLLQRGF DSNDSTDSLE RKRDISRALL 420
  421 EHVDTKSDIT SKHVVVDGGF TEAGFTPATH YQYSPSEYIP PGSMTQIDNN NRYLALQQNI 480
  481 FERAPMVSIV

Type	Start	End	Confidence
Cytoplasmic	1	178	0.88
Transmembrane Helix	179	199	0.93
Non-Cytoplasmic	200	207	0.75
Transmembrane Helix	208	229	0.93
Cytoplasmic	230	240	0.75
Transmembrane Helix	241	265	0.87
Non-Cytoplasmic	266	294	0.79
Transmembrane Helix	295	316	0.90
Cytoplasmic	317	336	0.72
Transmembrane Helix	337	359	0.94
Non-Cytoplasmic	360	366	0.74
Transmembrane Helix	367	390	0.92
Cytoplasmic	391	490	0.86