YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hst-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIGMCSIR GWKGVLGKNL FVFVAILFAA SIVYFYIDFP LKVNMRTLED GFHDDDFYNY  60
   61 EDIVQREDTA LRFNKTSNDV IVFVHIQKTA GTTFEKFLVR YQQNLPCKCQ AHKKRCNCGR 120
  121 RSSNETWLFS RYSTGWVCGL HADFTELVVN SCVQKVLDKQ AGHKKKRNYF YTTFLRNPTD 180
  181 RFISEFRHVQ RGATWISSKH VCNGKPASVN DLPTCFDPRI GWEGVSLEEF ISCPYNLAFN 240
  241 RQTRMLSNLS LVGCYEHMRK PSYEQDKIMI ESAKENLRKM SFFGIKEQMD DSQFYFENTF 300
  301 DMQFTRKMSV WGKSKSNDTV LSESQLAYIR NVNKLDWELY EYAVQLFDER VSQLRRKRRI 360
  361 RR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	362	0.99