YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.81
Transmembrane Helix	110	131	0.93
Non-Cytoplasmic	132	136	0.78
Transmembrane Helix	137	157	0.89
Cytoplasmic	158	165	0.83
Transmembrane Helix	166	186	0.72
Non-Cytoplasmic	187	199	0.66
Transmembrane Helix	200	224	0.86
Cytoplasmic	225	230	0.51
Transmembrane Helix	231	255	0.78
Non-Cytoplasmic	256	264	0.61
Transmembrane Helix	265	287	0.66
Cytoplasmic	288	305	0.46
Transmembrane Helix	306	332	0.81
Non-Cytoplasmic	333	352	0.49
Transmembrane Helix	353	381	0.77
Cytoplasmic	382	396	0.84
Transmembrane Helix	397	419	0.88
Non-Cytoplasmic	420	425	0.83
Transmembrane Helix	426	449	0.89
Cytoplasmic	450	464	0.88
Transmembrane Helix	465	484	0.94
Non-Cytoplasmic	485	497	0.73
Transmembrane Helix	498	524	0.86
Cytoplasmic	525	681	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILANGVTW QLWESTLNQG TATSGIMRFA LKTALSICIF LLIFQTVDSD SSDSSASASV  60
   61 VSGAVKSEDT VVAVNKTDVL GEAIDANATS LEQHGAAIVG NVSEEKKRSL AIFFILFVIM 120
  121 LATLVVHMLI VSKIHWMPES LAIVALGALI GSILSYSRRD WSEIEALSPD VFFLVLLPPI 180
  181 IFENAYNLNK GYFFSNFVPI LTFAIFGTTI SAMVIGAGLY ILGAIGLIFE FTFFECFAFA 240
  241 AMISAVDPVG TLAIFQAVKV ESLLYMLVFG ESMLNDAVSI VLAATALRHA KPSFNSLPAS 300
  301 EIITSAFVTF TEMFFFSACL GVGIGLLSAL LFKHVDLRKT PSLEFALLLI FSYIPYGFAE 360
  361 ALDLSGIMAI LFCGISMSQF TRHNVSPIAQ ITFRHTFRTI SFVAETSTFA YIGMAFFTIK 420
  421 LNFAPWLIFW SVVLCLLGRA CNVFPLAYLV NQCRKDVQIS MKNQIIMWFS GMRGAVCFAL 480
  481 VLYMDLDKEK KSILLTTVLF LILFTTIFLG GSALPFISFI NRCYPNERQR KRRRTPRNKE 540
  541 STGNSSALMM SKTQEMSFFG SDDWGPKKSA LDATSSAGRI MRQLFVRKFT AIERLENRDK 600
  601 LAALTKRALA SDQMTDSDDV EFGGGGGVGG GGRMKDDVTP TRGRSGSRNS SDVIISAGGG 660
  661 GVSGEHHLLI SSGSDSSTNE F