YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hmt-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.86
Transmembrane Helix	25	47	0.84
Cytoplasmic	48	69	0.89
Transmembrane Helix	70	92	0.88
Non-Cytoplasmic	93	98	0.72
Transmembrane Helix	99	121	0.87
Cytoplasmic	122	129	0.84
Transmembrane Helix	130	149	0.93
Non-Cytoplasmic	150	167	0.89
Transmembrane Helix	168	191	0.90
Cytoplasmic	192	224	0.89
Transmembrane Helix	225	247	0.84
Non-Cytoplasmic	248	264	0.81
Transmembrane Helix	265	288	0.74
Cytoplasmic	289	341	0.95
Transmembrane Helix	342	364	0.90
Non-Cytoplasmic	365	369	0.74
Transmembrane Helix	370	391	0.90
Cytoplasmic	392	457	0.95
Transmembrane Helix	458	480	0.89
Non-Cytoplasmic	481	491	0.85
Transmembrane Helix	492	514	0.59
Cytoplasmic	515	801	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSPFLDEC RAEGLWPIGP SCNKIISFGV YTFFIVVNFI VLCIPNSNSA NNNYRRMTDD  60
   61 DASSTSKLTI SKILSICTIF AVICQSIFYF CFTFYFHPYT HLLLAFCVSK LFFWILSLCS 120
  121 FSKWRNQPST PISLAFAFSA ALLIHCIPLT DWKKYFEPTS KNRGDLTFYI IELALVTVVF 180
  181 FFTIVTGLFN FSGCSSRESA WNNLSKKVVT VAPYIWPTKS ISLQLRVVFC LFLLIIGRLI 240
  241 NVSLPILSKW IVDELATPDT FQYSLLFLAT FLKFLQGNGA MGGFLNTVRT YLWIPIQQYT 300
  301 TRELEVELFK HLHSLSLRWH LSRKTGQVLR VMDRGTSSVN NILNYILFNV VPTIADIVIA 360
  361 VIFFFSAFNA YFGLIVFGTM ALYLTVTISI TEWRTQYIRE ANEKDNATSA IATDSLINYE 420
  421 TVKYYGNEEF EVNRFKNAIE SYQVTEWKTQ ASLAFLNCLQ NAIIGIGMIG GSVFVVYMIV 480
  481 HEKTLTVGDY VLFTTYLLQL YTPLNFFGTI YRVIQKAFVD MENMFDLMND EVEVKDLPHA 540
  541 LPYTDPRGTI SVKNLTFEYN TGLPVIKNIS FEIGNGQTVA LVGSSGSGKS TLIRLLFRLF 600
  601 ESTEGSIEFD GIDVRNYTMH SLRQQIGIVP QDTVLFNDTI MYNIRFGRPD ASDEEVIEAA 660
  661 KAAMIHEKIT SLPEGYATMV GERGLKLSGG EKQRVAIART ILKKPQFIFL DEATSALDTP 720
  721 TERAIQKCLE KLCKSRTGVV VAHRLSTVVN ADLILVLDKG IILERGNHKE LLAQQGTYAS 780
  781 MWEAQIAEQR AKSIELGEEL P