YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mec-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLQSAAAHF INRFIIWITI FMVACFLLRL LVVLDLNKRV YNHTPGPCRV LTDNYKGTAG  60
   61 MTYVESQKRV YITLGYGRAH DLKTKTGIAF YKTNRTDGRS QQEMYDLIEM TINWNGYEYK 120
  121 KEFIPTGIDS YSSSNGRVLL YVINAHPNHQ CIHFFQIVES SKLNHRKAIC DPSFSSLQDI 180
  181 AVVGPDRLFV TNMAAFGRGW AQILEFSLQT GQGAVYYYDG SKLSTAASSL IAPTGIGYDA 240
  241 KRRILYVGSM IRESIFAYKV AKDTTLELLY EMMLLTSPIG VFVESKTGDI WIAAHPVIHE 300
  301 SAWHYTHPEN QNIHSPSQIL RIRIQEEGNS WVTTEPYAND GATISASSSV VFTDEQMLIG 360
  361 SSFGRLLHCD LTHSYIT

Type	Start	End	Confidence
Cytoplasmic	1	12	0.69
Transmembrane Helix	13	33	0.92
Non-Cytoplasmic	34	377	0.80