YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ram-5
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYSTKHVIG YIFSFVVLAT STDFDNAHVM GVPQVTCSAK LITVSFNTNI PFQGRISVFD  60
   61 KLFIPACNHD YSTNIQKNAT FQMDILKCAN PMFLKNGSRL LRAYVEIGFH PLVMTNSDRT 120
  121 FLVECLDNTI MPIVNRAQSF ADCTHLVRMA SEWSSMSEFQ VGDAIVHEWS CKLPNPAKTQ 180
  181 TFLTNCNALS QNGQIIHLID ENGCVIDSEL MGDIVYSDHV PKLYARARIF KFLTDDKYRI 240
  241 ECTLEFCNNG SPCKDRVFPP KCAFTKEEIT SRSTKNQLEQ SGMTTMPGIP SSAYDSRLKI 300
  301 SSAWLTIKLN QYTETKGLHP RYHLKTFLDP TLHETISPND ADHFLMGISY REPIPKLSSQ 360
  361 SELSHPDNNR VEGARILHSS AFQPIISPPI DSHEEFIETI TFGSNLNSEP IVNVQKEMHL 420
  421 QKEPVHKVFT HKDPLKTEKT EKFMKLVQIE NEDRNHGAAL ETTQQSRMFT TTMPSTMIST 480
  481 TTTPMTSSSR TDKLPSEHFN HPELDTFEKP KKSFEKSHSL VQMTETTTAP AANLKFYSTT 540
  541 ASTKKLTPTT PYASAPPESS TQTPNSTKPT SIRNVTHSVP TVKKYDKFVN NNADWRFDDK 600
  601 AINDSDIVSE KQTSACYNAT IISSQRQCKW SGVEHLLLIW SFASLIVWMM LIALFLYRYS 660
  661 SRKPQWIGFR EQELRRVAQS RVLSQDHPWL HADAFEERNQ SKNEIEINHF T

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle