YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-19
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRTPASTGP LRQDRQMFFH ATLARSFINA LSVRGDDDAV DRLNYYYTPL ILAVCCLVIS  60
   61 AKQYGGTPIE CWVNPHSRES MEEYIESYCW IQNTYWIPMY ENVPDDHTAR EEKQIGYYQW 120
  121 VPFILIAEAL MFSLPCIFWR LCSFQSGLNI QTLINAACDG QALLDASDRQ KAVEAITTNF 180
  181 VDNLDLQSPN GRIRARGWIA RIKFSRFLSG QCLSILHSFT KLLYSMNVVA QFLILNACLK 240
  241 SSDFLFFGFQ VLNDIWAGRP WTETGHFPRV TLCDFEVRYL ANLNRYTVQC ALLINIINEK 300
  301 VFAFLWCWYM ILAIITTCSF IYWIANSFIH SEKVDYVMKF IQIAESSEFK KLQKFEKDAT 360
  361 VERLYTVIAF APHLLDTFVS DFLKSDGVLM LRMISNHAGD MIVVQLVRNL WQEFRERNWR 420
  421 EFEEHEEMKD VEMRRIHGGE RIVISNPGQT KSFL

Type	Start	End	Confidence
Cytoplasmic	1	44	0.70
Transmembrane Helix	45	64	0.54
Non-Cytoplasmic	65	119	0.72
Transmembrane Helix	120	142	0.74
Cytoplasmic	143	203	0.81
Transmembrane Helix	204	223	0.50
Non-Cytoplasmic	224	231	0.47
Transmembrane Helix	232	249	0.42
Cytoplasmic	250	301	0.56
Transmembrane Helix	302	325	0.89
Non-Cytoplasmic	326	454	0.56