YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	54	0.74
Transmembrane Helix	55	74	0.95
Cytoplasmic	75	94	0.81
Transmembrane Helix	95	115	0.91
Non-Cytoplasmic	116	144	0.87
Transmembrane Helix	145	162	0.95
Cytoplasmic	163	172	0.75
Transmembrane Helix	173	194	0.92
Non-Cytoplasmic	195	212	0.92
Transmembrane Helix	213	233	0.87
Cytoplasmic	234	247	0.86
Transmembrane Helix	248	271	0.89
Non-Cytoplasmic	272	291	0.93
Transmembrane Helix	292	314	0.88
Cytoplasmic	315	344	0.88
Transmembrane Helix	345	363	0.74
Non-Cytoplasmic	364	372	0.63
Transmembrane Helix	373	392	0.75
Cytoplasmic	393	403	0.87
Transmembrane Helix	404	425	0.94
Non-Cytoplasmic	426	431	0.85
Transmembrane Helix	432	451	0.96
Cytoplasmic	452	523	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVFGVSAS MPDDSRSQKM GLLGAISYIV GNIVGSGIFI TPTSIIENVN SVGLSLAIWI  60
   61 LAAFISMLGS FCYVELGTSI RLSGGDFAYL CFMKWYPVAF AFMCIGCTIN YPATLAVQAQ 120
  121 TFAEYVFRGA GVELDETSEF WAKKLLGFSL IILLMFMNFF SLKTFVQRFS ILASLAKIAA 180
  181 TLLIIITGFY YLIFKHWKQN LEEPFKGSNW NPGPFVNALF AGLFSYDGWD ILNFGAEEIE 240
  241 NPKRTMPLSI IIGMTCIGVI YVAVNVAYSI VLSPTEMIAS NAVAIDFANK TLGAAAFVVP 300
  301 VMVAILLIGS LNSTMFSASR YLQAVSRQGH IPSAISGIAP NCDSPRVALL VHILIAIAVS 360
  361 FLGDPDKLIN YVAFAQWSQR AFTMSALLYL RIRGRPRHPD RIQLPIIMPI LFFLVCTSMV 420
  421 VISIIDDFKS SAVGLGILLG GLIIFIIFVW DRALPSSHTF RNATHVINEE STKFMQIIFN 480
  481 VVPERVGDEE MKNAIGGAES ESEKVPAYKI SPTGNGQFKC TRM