YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tag-140
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIDLSDLDK PVNASQLIHQ VLHDAFLAAD LGNYTEAVNL LDKPPAWQTW GIGFAIVSGC  60
   61 SFSAPLGILL LPCLSKSLYE RIMTFLVAVG IGALSGSTIF IMLPQAFHLT SFEHFEYHTK 120
  121 SLIILCALYA FFTVDRMLQY ILEFRRRRQT KRRIHASTIA SLMNTPTTKR RDNGHNTTEE 180
  181 TIVPSEPPTI TRLQVPDLHN HHRFRRESEL SDVERTEQQE KEMAELANDL EMALTNNVLA 240
  241 RTFSTRRRVA VVSGGLDDIE FRSPKLSSHH TNGNTSQFLD VINNEFHRRM TPLSSRPGSP 300
  301 VTINVEEPKE SYEMKQKSEK PGLNHQDNSD SMSVSIRVVE KKVIEPAAME VASVAYMIIF 360
  361 GSSANNFVDG MSMGAAFSDN LLRGLSIGIA VISQQFPQEL GTLAILVKSG LGLKKTLLFN 420
  421 MVPIVLSFLG FSIGVMLDSV DDSYDEYIFA ISSGMYMYIF LGTLIPEIRE STNELIKENL 480
  481 AESILVSILQ ACGILFGTTF MYFMSRVNSV DF

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.94
Transmembrane Helix	50	73	0.90
Cytoplasmic	74	81	0.90
Transmembrane Helix	82	103	0.93
Non-Cytoplasmic	104	120	0.79
Transmembrane Helix	121	139	0.95
Cytoplasmic	140	416	0.87
Transmembrane Helix	417	437	0.95
Non-Cytoplasmic	438	446	0.83
Transmembrane Helix	447	465	0.96
Cytoplasmic	466	483	0.85
Transmembrane Helix	484	504	0.93
Non-Cytoplasmic	505	512	0.92