YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-50
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYSQMRWMF FCLTALLHGS FIVNAAKILV YCPSISKSHV LLCSKYADLL HNAGHDTVLF  60
   61 IPSYSKLLDN YDGAKHAKVW RLHNVTEAYD TKLGTLANVM ENSHIGFIDR LTFDADFWID 120
  121 MCADLLGKLP EMQHIIDYKF DLVIYNEIDP CTPAIVRLFN IPKTVLLSSE AIMDKVAWNL 180
  181 GLPTLPSYVP SVEENPNHDR MSFFERMSNV YKFFQSIVVH YLQDIHVLNL FRKEVSSDFP 240
  241 SIAEIIRNVS LVLVNTDEIF DLPRSYSSKF VYVGMLEAGK DENVTLPKKQ DDYFKKGKSG 300
  301 SVFVSFGTVT PFRSLPERIQ LSILNAIQKL PDYHFVVKTT ADDESSAQFF STVQNVDLVD 360
  361 WVPQKAVLRH ANLKLFVSHG GMNSVLETMY YGVPMVIMPV FTDQFRNGRN VERRGAGKMV 420
  421 LRETVVKETF FDAIHSVLEE KSYSSSVKRI SHLMKNKPFT SEERVTKWID FVLKYETSEH 480
  481 FDLESNNLSI IEHNHLDLFF YLCIISLLNF VVYRKIFKRK SQS

Type	Start	End	Confidence
Signal Peptide	1	25	0.96
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	494	0.99
Transmembrane Helix	495	513	0.88
Cytoplasmic	514	523	0.77