YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-58
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFYSPNVAP QPSSTSHRRP TLTHQHHLHV GHLDTRLSVQ IPEILSRSLV HDPERTRLVP  60
   61 EQLRFIIDEN QELWTGSQPP TGFLELCASP VSSVFSNADA RRMSQRKLVL RRPTISIQED 120
  121 GKIIIDHVTA RWEGANINSQ SALLDADDGA TVITDTIKDD QDDKEPKSCP QQTVKYIKIL 180
  181 TPHVILVSVL IGYLCLGAWI LMLLETRTEL LARSKKLVRL TNLMSNFTAE SWKMLNNAQH 240
  241 GVSNMDEGEW AATFREWMVR VSETVDDRRP IRRELNRPDD LSNMHNKWTF PTAILYVLTV 300
  301 LTTCGYGEVS VDTDVGKVFS VAFALVGIPL MFITAADIGK FLSETLLQFV SFWNRSVRKV 360
  361 KQWMSRIRHG RRKSLQSTGG PNDTLDILGV DGTEEKLWFP IGAYVSCICI YCSIGSAMFI 420
  421 TWERTWSFIH AFHFGFNLIV TVGLGDIVVT DYIFLSLIVA FVIVGLSVVT MCVDLASTHL 480
  481 KAYFTRIHYF GRAKRFLGMS EELKEIVALL GAMRRKKGGK VTWNDVRDFL DNELRDRPFE 540
  541 PHELLMKLRF IDETSSGMST IRHNSFQSDF FRESEYIRRV AALRPEQPAY L

Type	Start	End	Confidence
Cytoplasmic	1	179	0.66
Transmembrane Helix	180	203	0.88
Non-Cytoplasmic	204	287	0.70
Transmembrane Helix	288	307	0.76
Cytoplasmic	308	317	0.66
Transmembrane Helix	318	339	0.88
Non-Cytoplasmic	340	397	0.84
Transmembrane Helix	398	420	0.88
Cytoplasmic	421	428	0.69
Transmembrane Helix	429	449	0.87
Non-Cytoplasmic	450	453	0.71
Transmembrane Helix	454	477	0.87
Cytoplasmic	478	591	0.93