YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.44
Transmembrane Helix	23	43	0.85
Cytoplasmic	44	52	0.47
Transmembrane Helix	53	74	0.83
Non-Cytoplasmic	75	121	0.54
Transmembrane Helix	122	144	0.84
Cytoplasmic	145	199	0.86
Transmembrane Helix	200	221	0.77
Non-Cytoplasmic	222	238	0.87
Transmembrane Helix	239	260	0.94
Cytoplasmic	261	389	0.98
Transmembrane Helix	390	411	0.93
Non-Cytoplasmic	412	422	0.83
Transmembrane Helix	423	443	0.89
Cytoplasmic	444	452	0.88
Transmembrane Helix	453	474	0.54
Non-Cytoplasmic	475	482	0.39
Transmembrane Helix	483	501	0.49
Cytoplasmic	502	514	0.84
Transmembrane Helix	515	537	0.92
Non-Cytoplasmic	538	606	0.93
Transmembrane Helix	607	628	0.89
Cytoplasmic	629	802	0.88
Transmembrane Helix	803	823	0.90
Non-Cytoplasmic	824	872	0.93
Transmembrane Helix	873	894	0.89
Cytoplasmic	895	982	0.77
Transmembrane Helix	983	1007	0.90
Non-Cytoplasmic	1008	1062	0.63
Transmembrane Helix	1063	1083	0.88
Cytoplasmic	1084	1094	0.56
Transmembrane Helix	1095	1115	0.84
Non-Cytoplasmic	1116	1134	0.67
Transmembrane Helix	1135	1158	0.72
Cytoplasmic	1159	1183	0.60
Transmembrane Helix	1184	1209	0.80
Non-Cytoplasmic	1210	1225	0.54
Transmembrane Helix	1226	1242	0.44
Cytoplasmic	1243	1279	0.67
Transmembrane Helix	1280	1303	0.84
Non-Cytoplasmic	1304	1926	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQHLPKNDK KALSEWLERT EPYFMGIFCL ECVLKVIAFG FALHKGSYLR SGWNIMDFIV  60
   61 VVSGVVTMLP FSPATQTANQ PVDSVDLRTL RAVRVLRPLK LVSGIPSLQV VLKSILCAMA 120
  121 PLLQIGLLVL FAIIIFAIIG LEFYSGAFHS ACYNERGEIE NVSERPMPCT NKTSPMGVYN 180
  181 CDVKGTTCLQ KWIGPNYGIT SFDNIGFAMI TVFQCITMEG WTTVMYYTND SLGSTYNWAY 240
  241 FIPLIVLGSF FMLNLVLGVL SGEFAKERER VENRREFLKL RRQQQIEREL NGYLEWILTA 300
  301 EEVILKEDRT TEEEKAAIME ARRRAANKKL KQASKQQSTE TEEDFEEDED EMEEEYVDEA 360
  361 ERKKRGCCHS VGKFIKQLRI QIRIMVKTQI FYWSVITLVF LNTCCVASEH YGQPQWFTDF 420
  421 LKYAEFVFLG IFVVEMLLKL FAMGSRTYFA SKFNRFDCVV IVGSAAEVIW AEVYGGSFGI 480
  481 SVMRALRLLR IFKLTSYWVS LRNLVRSLMN SMRSIISLLF LLFLFILIFA LLGMQLFGGR 540
  541 FNFPTMHPYT HFDTFPVALI TVFQVSKNVI NCKCINVLKI LTGEDWNEVM YLAIESQGGI 600
  601 YSGGWPYSIY FIVLVLFGNY TLLNVFLAIA VDNLANAQEL TAAEEADEKA NEIEEESEEL 660
  661 DEQYQEGDHC TIDMEGKTAG DMCAVARAMD DLDEECEEEE SPFGGPKPMV PYSSMFFLSP 720
  721 TNPFRVLIHS IVCTKYFEMM VMTVICLSSV SLAAEDPVDE ENPRNKVLQY MDYCFTGVFA 780
  781 CEMLLKLIDQ GILLHPGSYC RDFWNILDGI VVTCALFAFG FAGTEGSAGK NLNTIKSLRV 840
  841 LRVLRPLKTI KRIPKLKAVF DCVVNSLKNV FNILIVYFLF QFIFAVIAVQ LFNGKFFFCT 900
  901 DKNRKFANTC HGQFFVYDNQ NDPPRVEQRE WRLRPFNYDN TINAMLTLFV VTTGEGWPGI 960
  961 RQNSMDTTFE DQGPSPFFRV EVALFYVMFF IVFPFFFVNI FVALIIITFQ EQGEAELSEG1020
 1021 DLDKNQKQCI DFALNARPRS LFMPEDKNST KYRIWRLVTS PPFEYFIMTM ICCNTLILMM1080
 1081 KYYNNPLFYE EILRLFNTAL TAVFTVESIL KILAFGVRNY FRDGWNRFDF VTVVGSITDA1140
 1141 LVTEFGGHFV SLGFLRLFRA ARLIRLLQQG YTIRILLWTF VQSFKALPYV CLLIGMLFFI1200
 1201 YAIVGMQVFG NIWLNAATEI NRHNNFQSFF NAVILLFRCA TGEGWQDIMM AAVQGKDCAR1260
 1261 AGSAEINFEK GQTCGSNVSY AYFTSFVFLS SFLMLNLFVA VIMDNFDYLT RDSSILGPHH1320
 1321 LDEFIRVWAD YDPAATGRIH YSEMYEMLRI MAPPVGFGKK CPYRLAYKHL IRMNMPVAED1380
 1381 GTVHFTTTLF ALIRESLSIK MRPVEEMDEA DEELRLTLKK IWPLKAKKNM VDLVVPPNHE1440
 1441 LCFQKLTVGK IYAGLLILEN YRARKSGTEV GGQGLFGGGL RSLVAAAKAA ESQHSSHTPQ1500
 1501 PPEETTPIIP QHAQQFSAAP TMSAQGSLQQ MQGTSSGGGQ RPYSLFNSFV DTIKSGKQDG1560
 1561 DVTDVQYQSV DQQHEKMNST GRRLSDMFSK IRRGTSADHN PHQNYSHRFG YSRNRGSRYD1620
 1621 ETEHLLAQDN RSPSSPRYRS MARASPPSPA ERYGHPPRYR TESPPSSRSE YQMSIRDPII1680
 1681 RRNRYNTMEH SRSSHDPQYH QDQQQQQQPH HQQHSQHLQH SHHKTYQNHN QYSRSPIYSD1740
 1741 DSSVAESYRR EREFRRYQDS TPQDVSEDDD PMPTAVRARR LPLISTMPTH YESAYQPSSY1800
 1801 NQHLNDSYGL GTGYQRDYHT SHSHSHHPTS QQQQHQPMYS TSPLISPRSS HSYYTPRSSQ1860
 1861 YYEIPSPSPD IYPSYRGSAS PRRYPTSTVV VAPDREGSSA RVIQAQPGSI PLSDSETEDD1920
 1921 PRWAIV