YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31209
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYNISSTIK KWRKQKKVSQ FYENQNALLE AHKEDMQTLT EEESDKAAEK EKRDLVWDSR  60
   61 ITTLTIILNV SLIIAKSIVA YFSGSLAILA SVVDSFMDIT SGVVVWYACY KIEKMNKEQY 120
  121 PVGMRKLEPL TVVIVGMIML FANFIVLERA TVQTIEDKLD PRVDLTTLIV LCTGTATKFC 180
  181 LFMICRVRKS AACLVLAIDQ RNDCLTNIVA LLGAWIGQNW WKYADPLGAF MVSGFIIVTW 240
  241 FLTIREHIPY LIGRRADQEF INRITNISIN HDQRIKALDT VHVYHFGEKF LVEVHAVFDE 300
  301 PAPLQMAHDV AESLQVKLEK LPFVERAFVH CDYKFDGDEH V

Type	Start	End	Confidence
Cytoplasmic	1	60	0.97
Transmembrane Helix	61	80	0.92
Non-Cytoplasmic	81	86	0.76
Transmembrane Helix	87	110	0.90
Cytoplasmic	111	128	0.92
Transmembrane Helix	129	147	0.95
Non-Cytoplasmic	148	164	0.84
Transmembrane Helix	165	185	0.80
Cytoplasmic	186	202	0.73
Transmembrane Helix	203	218	0.76
Non-Cytoplasmic	219	225	0.66
Transmembrane Helix	226	244	0.94
Cytoplasmic	245	341	0.93