YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31201
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGVFSICQQ TCKNKPKYDL DEARKLSRRQ HHRGPDFSGC YQDTKTGDIL VHERLAIMDL  60
   61 GVVQPLQGTA PNRQVIHNGE IYNHQELRDT ELKKYNLKTH CDSEVIIFLY EKYRDGHICN 120
  121 LLDGVFAFVL CCDGDFLAAR DPLGVKQMYY GIDDDGRYFF SNEMKCLEDS CGDNKIESFP 180
  181 PGHYYTPKTG FVRYFNPEWF DFRKAIHPLD LKLLQKTMIA SVHKRLMSDA PIGVLLSGGL 240
  241 DSSLVSSIAS REMKRRGMAV HSFSIGVDHN SPDVVAARKV AKFIGTTHHE FYFSIEVSRT 300
  301 CVSLFGILSL MMSHPFVLLL QCTSSPKKSG NWESKLFFLE KELMKSSVDI STSTMPHPMR 360
  361 TFKRKPSIVF FISTHLIVFV LTSLRWLTQS KFVFHSWIKH LLRLQSVWTL HLSAHKNLKM 420
  421 GETARSLFSD QLSTRTNTHI CLMRFCGDKK NSSPTELDTA GLTLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	300	0.79
Transmembrane Helix	301	320	0.72
Cytoplasmic	321	366	0.80
Transmembrane Helix	367	387	0.92
Non-Cytoplasmic	388	465	0.78