YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31561
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	67	0.91
Non-Cytoplasmic	68	114	0.96
Transmembrane Helix	115	136	0.89
Cytoplasmic	137	144	0.83
Transmembrane Helix	145	166	0.92
Non-Cytoplasmic	167	172	0.77
Transmembrane Helix	173	193	0.94
Cytoplasmic	194	203	0.86
Transmembrane Helix	204	223	0.96
Non-Cytoplasmic	224	230	0.70
Transmembrane Helix	231	251	0.93
Cytoplasmic	252	324	0.96
Transmembrane Helix	325	345	0.92
Non-Cytoplasmic	346	352	0.90
Transmembrane Helix	353	373	0.91
Cytoplasmic	374	380	0.83
Transmembrane Helix	381	402	0.91
Non-Cytoplasmic	403	407	0.82
Transmembrane Helix	408	427	0.91
Cytoplasmic	428	447	0.85
Transmembrane Helix	448	467	0.70
Non-Cytoplasmic	468	471	0.58
Transmembrane Helix	472	495	0.85
Cytoplasmic	496	508	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEESIRLD VSSVSSDKVA TEQRDDKGPL KLTEPRKRMR EDFGYYEIRL LVLTQLGYIP  60
   61 VAAAMLMTAF MEPSPEWCDT VRETEQSWKL NPNNEFYSLS VERGFACQKN SNQTTAMMSS 120
  121 LLMWGALIGS FVCGFLSDRL GRKPVYLGCL LMITIGHILL TFSMYLSWMT INATLAAMGF 180
  181 FCGGYMVTNF VILTEAFELP KSRLLVVSLN GWSVSMAVTA LAASYTLNWY AYHTIFAIVG 240
  241 ACIAIISLAT CSESCRWLSA NGLQNDAKKI ALQITLLNNN RDIEEDDISI LSWHEILGFS 300
  301 APTHTDEKKT WKTLFKSTRF LKPTAVMCYS FMASSIVSFG FYFSIDVLPG NRYYNMTIMG 360
  361 ILKFILGFTP FFLNRFLTKR AIAISSVGLC CLAALMILPI QYYDIQCMRW VIIMLSLMIA 420
  421 AGIDPTWKIN HLYSAELFPT SVRSMARGVC NAGGRLGSVM APMIVYLRTF GFFIPNAIFA 480
  481 VLLFIQLVVI VIFLPDDSDK DANEMNDE