YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pbo-4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	107	0.97
Transmembrane Helix	108	125	0.90
Cytoplasmic	126	137	0.68
Transmembrane Helix	138	158	0.88
Non-Cytoplasmic	159	168	0.79
Transmembrane Helix	169	186	0.71
Cytoplasmic	187	197	0.62
Transmembrane Helix	198	223	0.89
Non-Cytoplasmic	224	235	0.56
Transmembrane Helix	236	255	0.93
Cytoplasmic	256	263	0.61
Transmembrane Helix	264	287	0.69
Non-Cytoplasmic	288	300	0.75
Transmembrane Helix	301	324	0.90
Cytoplasmic	325	334	0.65
Transmembrane Helix	335	352	0.84
Non-Cytoplasmic	353	357	0.75
Transmembrane Helix	358	378	0.90
Cytoplasmic	379	388	0.85
Transmembrane Helix	389	412	0.88
Non-Cytoplasmic	413	425	0.88
Transmembrane Helix	426	449	0.91
Cytoplasmic	450	464	0.94
Transmembrane Helix	465	486	0.89
Non-Cytoplasmic	487	494	0.84
Transmembrane Helix	495	517	0.90
Cytoplasmic	518	783	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWIKLLFFFT TLLVSTSGLG DDGITALLDP NSTEFSTVLP SNNSEKFSYM LASVKNMNMT  60
   61 ASEFEEFIKV LKHRQSKDHS GEHVGNEHDE SHGISVVSWH WDYVKNELVL TLFFIVIGLF 120
  121 KLVYHHTFVT RKILPESCCL IFIGIAIGFF FVGDATHASI KFLEFKSKVF FFYLLPPIIL 180
  181 ESAYSLKDRA FIENIGTILL YAVVGTILNI VLLAAALLIL IWVGIMGKYN LSVMDILTFA 240
  241 SLVAAVDPVA VLAVFQEVGV NKMLYFMVFG ESLFNDAVTI VCYNLAIEFQ TLPDFTWYHG 300
  301 FLGLLSFLCV SIGGLIIGLI CGAISSFVTK FTTDVRVVEP VVLFGMAYLA YLGSEMFHFS 360
  361 GIIALIACGL FQTHYACCNI SYKSFTSVMY ITKVCSTLCE SLIFIILGVM LVNEREWFWT 420
  421 DWHPVFSAVS VVLCVVVRFG VTFFLTYFVN QFTGGVRHIS FQEQFIMSYG GLRGAVSFSL 480
  481 VFMISANPDV KNTMLGATYA VILFTNIIQG STIKLFVKWL NIRLAKKEDH FRLFIEFNNG 540
  541 MVQHLSQGIE DLCGDKSLSL INRMSELSKK YVRPLLEKNY TANKAKKEGK LVELNRAVAM 600
  601 REALNNSPSQ SSFQRQHTID EMAESGALPH DLLDEEHQGH HHHGQVHPDN EDADQRANEL 660
  661 IKDVSSIRQL MHNPFEDCYL DRNLTHEEEK EQARLKMKKT RAFKFSSVRK TIGFFGKKKS 720
  721 VRRHATQQGI LHSAIATIGV QSVDRPSTST RVSVEDEEQG LTMKEMEEEH PLMTITESEE 780
  781 TSF