YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fmo-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNNKKLLI VGAGASGLPS LRHALLYGID VTCFERTKDV GGLWHYKPQE TELSSVMKTT  60
   61 VINTSKEMTA YSDFPPESRM ANFMHNTEMY RYLLNYSKHY ELEKHIKFNH KVNSIDRNED 120
  121 YEKTGKWKVN YTDDKGATHD AVFDGVMLCS GHHTTPNWPQ KFRGQDDFKG RIIHSHSYKD 180
  181 HRGYEDKVVV VVGIGNSGGD VAVELSRIAK QVYLVTRRGT WVFNRIYDYG QPIDIAMNRK 240
  241 CISDLRSFVP AWLTNTVVEA KLNQRFDHQA YGLKPSHRVF GAHPTVNDEL PNRIACGTVR 300
  301 IKPNISKFTE TGVLFEDGSL IEQVDEIVMS TGFSFEFNLV ENGQLIRTHD NQVSLYQYMF 360
  361 PIELGDHNSL AVIGLVQPFG SIMPLSEMQA RVYLEEFTGN HVLPKKNEMT QNVHDKLETM 420
  421 ARRYVTSRRH TIQVDYVDYI EELAKMIGAD LDMKKLWKED PWLAYKVYFG PCVPYIYRLK 480
  481 GPHKWNNARD AIMSVDERVL MATNDHAQVA PDYTLLYIVG LIFAIIAVFY ILF

Type	Start	End	Confidence
Signal Peptide	1	24	0.96
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	512	0.98
Transmembrane Helix	513	532	0.91
Cytoplasmic	533	533	0.90