YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-34
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLPLSRSN SSTSLSKVEA VEKYYERNAH TVSGFQRNQD TFGQLQRRYK PRQDAISVLS  60
   61 SPGALGEPVM PTDRHFDRSM YWFAFHRKQI GLRHIMVALM VLSYTIFGAF MFWTVESRNE 120
  121 RAVTLERVTN LENLLNILAT NITEIVNNPN TTTTEAEMQV YIREAYVSLM KLEGQYKGST 180
  181 YYKLEDHGKN WKWTFESAFF FSMNVYTTTG YGSIAPESIL GQVLVCLYGF IFVPVTLVAL 240
  241 RDLGQFFLVH LTKLYAQLIQ RWREINGDTS IDVNEIIKIP IKACLLLLAL YLAFCTIFIH 300
  301 VFDELSGDES GSGMSVFLCF YFSFISLSTI GLGDIMPNNA TFSPIISIMF FFGMALTKVV 360
  361 NRNTFIAVEN GIFGALTLVE NKLDGIVRKG KEMPDEQKQP KALTPQMIQR ALSVEDYGAA 420
  421 QRENKNEVMN NFTVRSIATF MKSNTDIYGG GFGRVQLRRG DLMGSDHQMT TSSEKTSTSH 480
  481 HPESQV

Type	Start	End	Confidence
Cytoplasmic	1	89	0.79
Transmembrane Helix	90	113	0.88
Non-Cytoplasmic	114	218	0.67
Transmembrane Helix	219	240	0.86
Cytoplasmic	241	282	0.60
Transmembrane Helix	283	302	0.94
Non-Cytoplasmic	303	310	0.56
Transmembrane Helix	311	333	0.85
Cytoplasmic	334	339	0.48
Transmembrane Helix	340	360	0.84
Non-Cytoplasmic	361	486	0.47