YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abts-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	286	0.53
Transmembrane Helix	287	308	0.89
Non-Cytoplasmic	309	321	0.51
Transmembrane Helix	322	336	0.61
Cytoplasmic	337	337	0.01
Transmembrane Helix	338	354	0.75
Non-Cytoplasmic	355	367	0.43
Transmembrane Helix	368	389	0.90
Cytoplasmic	390	404	0.41
Transmembrane Helix	405	422	0.56
Non-Cytoplasmic	423	479	0.53
Transmembrane Helix	480	501	0.89
Cytoplasmic	502	513	0.56
Transmembrane Helix	514	536	0.84
Non-Cytoplasmic	537	558	0.52
Transmembrane Helix	559	581	0.86
Cytoplasmic	582	604	0.47
Transmembrane Helix	605	626	0.87
Non-Cytoplasmic	627	665	0.48
Transmembrane Helix	666	700	0.69
Cytoplasmic	701	736	0.75
Transmembrane Helix	737	757	0.87
Non-Cytoplasmic	758	763	0.63
Transmembrane Helix	764	781	0.83
Cytoplasmic	782	797	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEPESCID DTRYMTDDDD VIDEYDNVTL MYAKHEKIPM KDFGSEIRAT MDIDHLLNKA  60
   61 VLLLDLQETS LEEIFAKIIH EMDIQEPEFT SEQVRSVLFT QDAGNQFHIL SRTVQSICTT 120
  121 GSVGGSFDYD QTWICALCML NTVQHRHVAI ARLSHPTNLG RTMQDLRFII IVIAPSRAKG 180
  181 TKTALETTRT FATLFADMEI RQRLVMAQSV EQFRSTLLSA AKELAMDQNQ WRERKSSIHL 240
  241 SHAKEQIFGP EAWYPFRGLV EEFKRRLAIY PSDYLDGIRG HKTVQKLFST VVFLYFACLL 300
  301 PAIAFGVLND DNTKGAINVR KVIIAQAIGG IFFSLFGGQP MIILLTTVPL AIYIKVIFKI 360
  361 SQELGYDFLA MYACVGLFCQ MFLILYSATE LCSLMKFATR SAEEMFSLFI AIAFTVESIR 420
  421 AIHNSFKKNY NDCDTSAISM KAARTALNAF KNGSNADSIV GNITSSMSIG DTGSLCRRDT 480
  481 SILYMLLMFG TLWLGLFLYN FRKTPYLTRS RREWLADYAL PASVLIMSFT GSYAFSDIEK 540
  541 DRFNLRFEFP LIQMADVTSL PPSGYFVCLL LGFSLSFLFF IDQNITSAIV NNNQNKLKKG 600
  601 TSHNLDLFVV ALLNMFLSVF GLPWMHGALP HSPLHLRALA DVEERVSQGH VHEVIMNVRE 660
  661 TRLASLIAHV MILVSMFFLI PYPLQLIPTS VLHGLFLYMA LTSLSGNEMF ERLLLLITEQ 720
  721 QAYPPTHYIR KVPQRKVHLF TACQLLQLII LCAFGFSPYP FIEMVFPIVC FFFLPIRHTL 780
  781 IPRLIDYKYL DALDGRH