YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-16
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFILQQLLR FFRLKNFEHA KPFTLHCSLL MLVLLYSFLG GFIFDRIETN AHAEMKRNER  60
   61 INRTACVSQI LHSIHRWSHN QTHKVQYAED IADCFEPEKD ERSEWNFVTA TLYGFGIVTT 120
  121 LGYNRIAPIT YTGRMFCIVY GICGIPVTMI IIANVGQYLN NFAGDSRRKI EAYRQQRRMS 180
  181 KASLAGKIYK ESSIQVTSLA LLCVFLIYVA VGALLLPLLN GELDFFNGLY FNFLCLTAID 240
  241 FGQLVPIRVE LLPITFLYVC IGLAITTIAI NIGSEYMKKL HYWGKKMKNA AQTRIWFGGK 300
  301 TLKVRDLLHA VGKKCGVEPG MIDALDLENV VERTIAMQEG REPPEDLNDE PPREPSPRSI 360
  361 IHSPCSTRPS NPPMSPPSPR EDHPFIFKMD APAPRSPLPL PAYELDIKKP IFQALSNEFM 420
  421 NQSAQEKLFN DLDTFQIEIN TELVEDHKCE SVIIIEPPAT FEDMTIQHSL CVEDYEREEK 480
  481 VPKRFREKKE MYGRDPRKLY ETYQEEWDRL ERLSDRKHGP RRKSVLNLSN CSPERSVSPS 540
  541 PIRHSLTGEG HRRDS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	106	0.85
Transmembrane Helix	107	127	0.77
Cytoplasmic	128	135	0.66
Transmembrane Helix	136	156	0.92
Non-Cytoplasmic	157	195	0.78
Transmembrane Helix	196	219	0.89
Cytoplasmic	220	225	0.70
Transmembrane Helix	226	247	0.78
Non-Cytoplasmic	248	253	0.73
Transmembrane Helix	254	273	0.95
Cytoplasmic	274	555	0.89