YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-47
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSTLFLLLY ATRETVNAMT AEISPTVSYL LDRGCANDTE IIDHLLIDRA LYYNKHKLPS  60
   61 PQVDVRIEMW VQEVTSVSEL TQDFEIDLYM NEYWTDPGLA YDILNPCQGN LSFDWAVMQN 120
  121 IWTPNTCFIN SKKAQLHSSP FTNVFLMVFP NGSVWSNWRI KSTGPCVMDL TKFPMDSIEC 180
  181 TLTFESFNYN KDEVFMRWGD PPLTIFKPIE LPDFTMTNFS TSNKFQLYAA GYWSELNVNF 240
  241 LFRRRSGWYL LQGYIPTYMT VFISWIPFYL GPKAIPARTM IGVNALLALT FQFGNIIRNL 300
  301 PRVSYIKAID VWMLSGICFV FASLFELATI GFLMRNEGKP ATKSSRSTKN SNRWQQPSVC 360
  361 REDTQRKSQN IVFCERLDNT SRLMFPVVFT FYNFIYWFVY MKQAWDQAP

Type	Start	End	Confidence
Signal Peptide	1	18	0.77
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	247	0.79
Transmembrane Helix	248	269	0.91
Cytoplasmic	270	276	0.58
Transmembrane Helix	277	297	0.85
Non-Cytoplasmic	298	310	0.59
Transmembrane Helix	311	333	0.89
Cytoplasmic	334	382	0.68
Transmembrane Helix	383	400	0.81
Non-Cytoplasmic	401	409	0.58