YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30797
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVKHQILD LEIDKKVKSS SSSIIQGLCS IQLLSMIAVT AHHTAMPFFV QMANTSHFLP  60
   61 TTSVFMMEVL KLLFCLIIVL FKTKSFEKTG KKLYEHIWKN RVETLKVSVP AVVYAIQNNL 120
  121 YYIALANIDA TTYSVTVQLR ILTTALLSVI ILNQKLSNYQ WLAQGMALIG VVLVQIDNSN 180
  181 PHGKVFGNFW LGITAVFGMC WTSGFAGVYF EKMLKESSAD VWVQNIRLST LTLLFAGITM 240
  241 LSTDGEAVLT GKMFFGWNWI VWFVTIGNSI VGLCISLVMK YADNVMKTYC QSLAIGLTAI 300
  301 VSIFLGDRTL SIDLIYGVLL VTSSIVVYSR FPATTSTKYE PLEQDSDAEK N

Type	Start	End	Confidence
Cytoplasmic	1	23	0.94
Transmembrane Helix	24	45	0.90
Non-Cytoplasmic	46	60	0.86
Transmembrane Helix	61	81	0.91
Cytoplasmic	82	158	0.64
Transmembrane Helix	159	176	0.84
Non-Cytoplasmic	177	188	0.78
Transmembrane Helix	189	210	0.94
Cytoplasmic	211	225	0.84
Transmembrane Helix	226	243	0.89
Non-Cytoplasmic	244	258	0.73
Transmembrane Helix	259	279	0.94
Cytoplasmic	280	287	0.82
Transmembrane Helix	288	306	0.91
Non-Cytoplasmic	307	311	0.78
Transmembrane Helix	312	332	0.79
Cytoplasmic	333	351	0.85