YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glr-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGSPFIK IEYFIEYSII FSVWTFSAIA TVITALLVTV AAVLSPKEST AEFKIQNSVW  60
   61 YLVCILLRAG SGYNCQAGAT RLISAVWWSF TLVLIAQYTA NFAALLTVDR KSMPFNSFEE 120
  121 LGNQTEYNFG SILGGSTMQF FKYSRIETFR RLWERMQSAE PSAFVGTNHE GVNRVLNEKY 180
  181 VFLMESATLD YQVTQNCNLT RVGNVVLGSN GYSIALPKGS KWREKLTRQI LDLNEKGIIL 240
  241 MLKNNWWKKS QQECQSSEPE DLQTALGAEN VYGLFLLLAL GSGIGVLCAV LEHTHFIFFE 300
  301 KNKRNGQTPK LQQMIETIHA EIRNSPKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.41
Transmembrane Helix	20	44	0.89
Cytoplasmic	45	57	0.40
Transmembrane Helix	58	77	0.64
Non-Cytoplasmic	78	84	0.39
Transmembrane Helix	85	108	0.83
Cytoplasmic	109	271	0.69
Transmembrane Helix	272	293	0.81
Non-Cytoplasmic	294	328	0.72