YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30770
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	68	0.90
Non-Cytoplasmic	69	76	0.79
Transmembrane Helix	77	99	0.87
Cytoplasmic	100	118	0.95
Transmembrane Helix	119	138	0.92
Non-Cytoplasmic	139	146	0.67
Transmembrane Helix	147	164	0.93
Cytoplasmic	165	171	0.78
Transmembrane Helix	172	192	0.89
Non-Cytoplasmic	193	214	0.73
Transmembrane Helix	215	231	0.54
Cytoplasmic	232	243	0.38
Transmembrane Helix	244	265	0.89
Non-Cytoplasmic	266	282	0.55
Transmembrane Helix	283	305	0.67
Cytoplasmic	306	312	0.66
Transmembrane Helix	313	347	0.78
Non-Cytoplasmic	348	373	0.44
Transmembrane Helix	374	397	0.74
Cytoplasmic	398	409	0.66
Transmembrane Helix	410	433	0.88
Non-Cytoplasmic	434	454	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISDVEENS TPQKENVLQR SCSLTSKSLQ NNLNIIEKFG QQIRPYFGIG SLLIFLVVYH  60
   61 GFLVAAGIHN YQKAAPLIYV TLFFWICYLL NLIVGTKTFR AVYDDVGRKL EEITEQKKFV 120
  121 PLSLKIAFIF ALLAFTIIDS IHDLTRLTGF FAYVFYILFM FVFSNNRMKI NWSVVSSALI 180
  181 MHYCVALIIL KWSTGQWFFQ KFAELIVGFL EFAQVGAKFV FGFIAGPPNI CDLAPVFIFT 240
  241 SLQTLIYFSA VVALLFYFGI IQVVLQKSQW FMKVLIGTTP VESVNAWACT FLGMSEAPLM 300
  301 VAPYIEKLTD SEIFAIVTSG FACVAGTVFT AYVALGACPI YLLTASLLSA PMSLAYNNLG 360
  361 ILQKAGKLQP KSVVIATYAL CGFSNFSSMG MSIEFLGGLA PSKRSTISKL VLRALCAGSI 420
  421 ACFMNATVAG ILISSPVICQ SSQKSDTCFR IPSG