YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gly-18
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLKGTIPS LVTYAALVIF LYLFIVKPLV PRILESLNSS RNPQETSILS KIENDLLDDL  60
   61 DINCLNIFNG SKNRNQLRIV NSRSIEDKLL YSTDRCQTLK SLFRFNKVPL SPEEESFPLS 120
  121 YGLLVYKELS QVLFMLSSIY HPQNEYCIAV GENSAPIFQN LLKELSNCFS NIHFMKRPPI 180
  181 DWGSHEIINS AYDCLEFLSH LKSDWRYFQY LSGVDIPLKT NLEMVQILKH LNGTANVEIK 240
  241 PYQYQRLRGK NETQSPLPLF KSSLSSLIPR EAANHLSSSS IPQQLLEFLR NTGIADEGFW 300
  301 GTLFGNKNLF DIPGSLNFKE WISYKNNVET NLTYPTDGWR YYISRDQIWS KPNCHNYMKA 360
  361 GSCVFGIGDV PRLLKSKALV AHKFYLKSEP EAYFCLLKEH RRRTCNPDLT FDASKYSELP 420
  421 QVELSRGLAM PQLTHKNWIL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	30	0.88
Non-Cytoplasmic	31	440	0.98