YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	kvs-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINTRSCRYV ALSTSDKDSN QIAMVIPSTR KGHAASRDNF GNSNHHGDEI VHRLNNGRRS  60
   61 EIDEVKPDLV SGAGDTVIKL NVGGTSFRIR ISSIFARSAD EKLSAFAQLN HEQRLQACDA 120
  121 FLMPQEEYYL ERSAVLFDSI FKYYISGQLH RPLDVCPTEF ATELAYWKIN DGLMSNCCWR 180
  181 GYNMSPSLEE LVAPKEKKIE LHDRSMRSRI HQFCEGDGSL FSTLFTFGSI TFVLISVIGL 240
  241 VLGSIHEFQV PIYKKGGKSE RISNWSIVEN ENIIWEPHPI FGYVETVCII WFTVEFIVRL 300
  301 AVTPNRFQFL VGIMNIVDMI AIIPFYLELG LALFGIDVAS LSDIKGALLV VRVLRVLRVV 360
  361 RILKLGRYSS GMRTFALTLK SSARQLGMMG MVLSTGVVFF STLLYFVEKD EKDTPFTSIP 420
  421 AAFWWAIVTM TTVGYGDYVP VTVPGKLIAS GAIISGVLVL ALPITIIVDN FMKVSGNVNA 480
  481 NIFSSANQRP IDVAE

Type	Start	End	Confidence
Cytoplasmic	1	218	0.93
Transmembrane Helix	219	242	0.87
Non-Cytoplasmic	243	279	0.87
Transmembrane Helix	280	300	0.85
Cytoplasmic	301	308	0.74
Transmembrane Helix	309	327	0.87
Non-Cytoplasmic	328	384	0.55
Transmembrane Helix	385	407	0.91
Cytoplasmic	408	415	0.51
Transmembrane Helix	416	439	0.81
Non-Cytoplasmic	440	446	0.47
Transmembrane Helix	447	468	0.92
Cytoplasmic	469	495	0.55