YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	egl-19
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.89
Transmembrane Helix	90	109	0.87
Non-Cytoplasmic	110	127	0.74
Transmembrane Helix	128	149	0.79
Cytoplasmic	150	158	0.58
Transmembrane Helix	159	179	0.89
Non-Cytoplasmic	180	218	0.64
Transmembrane Helix	219	239	0.90
Cytoplasmic	240	308	0.89
Transmembrane Helix	309	329	0.81
Non-Cytoplasmic	330	344	0.89
Transmembrane Helix	345	369	0.89
Cytoplasmic	370	472	0.99
Transmembrane Helix	473	492	0.93
Non-Cytoplasmic	493	505	0.78
Transmembrane Helix	506	527	0.84
Cytoplasmic	528	539	0.80
Transmembrane Helix	540	559	0.71
Non-Cytoplasmic	560	599	0.68
Transmembrane Helix	600	623	0.88
Cytoplasmic	624	636	0.66
Transmembrane Helix	637	655	0.61
Non-Cytoplasmic	656	670	0.76
Transmembrane Helix	671	695	0.82
Cytoplasmic	696	797	0.88
Transmembrane Helix	798	817	0.85
Non-Cytoplasmic	818	835	0.72
Transmembrane Helix	836	857	0.87
Cytoplasmic	858	866	0.62
Transmembrane Helix	867	886	0.72
Non-Cytoplasmic	887	926	0.52
Transmembrane Helix	927	954	0.68
Cytoplasmic	955	1039	0.53
Transmembrane Helix	1040	1065	0.87
Non-Cytoplasmic	1066	1117	0.57
Transmembrane Helix	1118	1139	0.78
Cytoplasmic	1140	1148	0.50
Transmembrane Helix	1149	1171	0.84
Non-Cytoplasmic	1172	1244	0.45
Transmembrane Helix	1245	1268	0.85
Cytoplasmic	1269	1341	0.58
Transmembrane Helix	1342	1365	0.87
Non-Cytoplasmic	1366	1877	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLASMMSS GEDEEQAAAD EQERTDLWQQ TLQAAVAASS SQDATKKRPA QRKPLRQTNV  60
   61 VERSERSLLC LSLNNPIRKL CISIVEWKPF EFLILFMICA NCIALAIYQP YPAQDSDYKN 120
  121 TLLETIEYVF IVVFTIECVL KIVAMGFMFH PSAYLRNAWN ILDFIIVVIG LVSTILSKMS 180
  181 IQGFDVKALR AFRVLRPLRL VSGVPSLQVV LNAILRAMIP LLHIALLVLF VILIYAIIGL 240
  241 ELFCGKLHST CIDPATGQLA QKDPTPCGTD TEGSAFKCQP SDSLTNMGVR WECSSNTTWP 300
  301 GPNNGITNFD NFGLAMLTVF QCVSLEGWTD VMYWVNDAVG REWPWIYFVT LVILGSFFVL 360
  361 NLVLGVLSGE FSKEREKARA RGLFQKFREK QQLEEDLKGY LDWITQAEDI EPVNEDEQED 420
  421 EPVAQTVVGE EADEEGEERV EDVRPSKWAA RMKRLEKLNR RCRRACRRLV KSQTFYWLVI 480
  481 LLVLLNTLVL TSEHYGQSEW LDHFQTMANL FFVILFSMEM LLKMYSLGFT TYTTSQFNRF 540
  541 DCFVVISSIL EFVLVYFDLM KPLGVSVLRS ARLLRIFKVT KYWTSLRNLV SSLLNSLRSI 600
  601 ISLLLLLFLF IVIFALLGMQ VFGGKFNFNP QQPKPRANFD TFVQALLTVF QILTGEDWNT 660
  661 VMYHGIESFG GVGTLGVIVC IYYIVLFICG NYILLNVFLA IAVDNLADAD SLTNAEKEEE 720
  721 QQEIEGEDEE FEEGEDEGEE HGMDEPEGDE EMTSARPRRM SEVPAASTVK PIPKASSLFI 780
  781 LSHTNSFRVF CNMVVNHSYF TNAVLFCILV SSAMLAAEDP LQANSTRNMI LNYFDYFFTS 840
  841 VFTVEITLKV IVFGLVFHKG SFCRNAFNLL DILVVAVSLT SFVLRTDAMS VVKILRVLRV 900
  901 LRPLRAINRA KGLKHVVQCV IVAVKTIGNI MLVTFMLQFM FAIIGVQLFK GTFFLCNDLS 960
  961 KMTEAECRGE YIHYEDGDPT KPVSKKRVWS NNDFNFDNVG DAMISLFVVS TFEGWPQLLY1020
 1021 VAIDSNEEDK GPIHNSRQAV ALFFIAFIIV IAFFMMNIFV GFVIVTFQNE GEREYENCEL1080
 1081 DKNQRKCIEF ALKAKPHRRY IPRNRLQYRV WWFVTSRAFE YVIFLIIVMN TVSLACKHYP1140
 1141 SSRGFEDFLD VFNLIFTGVF AFEAVLKIVA LNPKNYISDR WNVFDLLVVV GSFIDITYGK1200
 1201 LNPGGTNLIS INFFRLFRVM RLVKLLSRGE GIRTLLWTFM KSFQALPYVA LLIVLLFFIY1260
 1261 AVIGMQFFGK VALDDSTSIH RNNNFHSFPA AILVLFRSAT GEAWQDIMLS CSDREDVRCD1320
 1321 PMSDDYHKGG LNESRCGNNF AYPYFISFFM LCSFLVINLF VAVIMDNFDY LTRDWSILGP1380
 1381 HHLEEFVRLW SEYDPDAKGR IKHLDVVTLL RKISPPLGFG KLCPHRLACK RLVSMNMPLN1440
 1441 SDGTVCFNAT LFALVRTNLK IYTEGNIDEA NEQLRSAIKR IWKRTHKDLL DEVVPPAGKE1500
 1501 DDVTVGKFYA TFLIQDYFRR FKKRKEMEAK GVLPAQTPQA MALQAGLRTL HEIGPELKRA1560
 1561 ISGNLETDFN FDEPEPQHRR PHSLFNNLVH RLSGAGSKSP TEHERIEKGS TLLPFQPRSF1620
 1621 SPTHSLAGAE GSPVPSQMHR GAPINQSINL PPVNGSARRL PALPPYANHI HDETDDGPRY1680
 1681 RDTGDRAGYD QSSRMVVANR NLPVDPDEEE QWMRSGGPSN RSDRRNPHLR EPMLVARGAA1740
 1741 LALAGMSSEA YEGTYRPVGE GKSVRLPFSS RPVLRPAEDS RPVDRLIGQS LGLGRYADAR1800
 1801 IVGAARREIE EAYSLGEQEI DLAADSLAPL MQHVGMHDIR DINENSRSAL LRPAENSSRQ1860
 1861 HDSRGGSQED LLLVTTL