YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-93
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	246	0.99
Transmembrane Helix	247	267	0.91
Non-Cytoplasmic	268	282	0.81
Transmembrane Helix	283	302	0.89
Cytoplasmic	303	308	0.67
Transmembrane Helix	309	325	0.96
Non-Cytoplasmic	326	332	0.76
Transmembrane Helix	333	355	0.91
Cytoplasmic	356	372	0.95
Transmembrane Helix	373	395	0.86
Non-Cytoplasmic	396	448	0.93
Transmembrane Helix	449	471	0.93
Cytoplasmic	472	490	0.94
Transmembrane Helix	491	513	0.78
Non-Cytoplasmic	514	532	0.73
Transmembrane Helix	533	555	0.89
Cytoplasmic	556	565	0.75
Transmembrane Helix	566	586	0.93
Non-Cytoplasmic	587	592	0.84
Transmembrane Helix	593	619	0.73
Cytoplasmic	620	631	0.79
Transmembrane Helix	632	650	0.81
Non-Cytoplasmic	651	653	0.69
Transmembrane Helix	654	676	0.86
Cytoplasmic	677	705	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQKMGDSN TWDLVGEQQQ RKKSRSPSRA SRVDSELLVG VENAAELEAL GLGKEQLEEE  60
   61 ARRHKKQRSK SPALENIRKT SIHLLQKFGA IPKKKDDSVL LFRFHDIPDI PLESLCIRPK 120
  121 EFFEEPKVFS FRDMGREQQK AEVNEKCSYL FRGTSFDHDD HFELPTETGR VPEYDHFCPI 180
  181 HGSRRRLPRN KLVTMQTLMH SVDDEDNEDL AYIYGHDFLA KLVRKKKREM MSGTEKERAN 240
  241 KIKRKIMSNL WILSVAFLFL FTAFNGLQNL QTSVNGDLGS DSLVALYLSL AISSLFVPSF 300
  301 MINRLGCKLT FLIAIFVYFL YIVINLRPTY SSMIPASIFC GIAASCIWGA KCAYITEMGI 360
  361 RYASLNFESQ TTVIVRFFGY FFMIVHCGQV VGNMVSSYIF TLSYSQALRG PEDSIYDSCG 420
  421 YQFPKNLSDL TELAESNLAR PPQKVYVAVC LAYLACVIIS GMIMSMFLNA LAKDARNRKM 480
  481 AQKFNSEIFY LMLKHLINIK FMLLVPLTIF NGLEQAFLVG VYTKAFVGCG LGIWQIGFVM 540
  541 ACFGISDAVC SLVFGPLIKL FGRMPLFVFG AVVNLLMIVT LMVWPLNAAD TQIFYVVAAM 600
  601 WGMADGVWNT QINGFWVALV GRQSLQFAFT KYRFWESLGI AIGFALIRHV TVEIYLLITF 660
  661 FMLLLGMCGF LAIENFDHII KFWHHLIHTS CPEKEPLDDR NSDFE