YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-17
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSGAYSFR RLTLAHLHDN PPLFATGRRK SSSTAQPRPS ITSATIGVGD PFIPYYHYRK  60
   61 PPSRPPSRPP SKPPSNRNSA ALSRHNTVRS HQFAFAYDEN IGRVKWEEYN RREGIEDVPE 120
  121 QPIVVRVPIW RRILKLLKIL LPHVGLNVLL LSYIAMGATV FIWLEADHEL EGRKAKVKHV 180
  181 FDIYSQIMNE TIALTNNQSD QATIVSRMRP LLESLSRAHE YDDKFTDTNQ LWTGEQDGMT 240
  241 TRWTFAAATL YALTVITSTG YDHVTPATDP GRIFTVFFGL IGIPLMFITA ADIGKFLSEI 300
  301 VIRTYAKLLA MWKMIANLVE LVRTHLFDTD VDSIDSMELK KSKKRNASSL DDEECEDEED 360
  361 RLQLPIASYF TLIIGYCCVG SLLFNTFEKG PVWSFIHGVF FSFNTITTIG LGNIRVQQHY 420
  421 YLALAVSYVI IGLAVITASL DLCSSTLKRT FTKLHYFGRK IRGARRGFAN MSDDIREAMR 480
  481 IIAALKKTRP SKDRITLEDL KRFLEVQEHL LRQPYVPYNV HLLRWIEDNV GPQMKNEFSL 540
  541 AEQYAQYMDD VSGGKTPMSP SRLSHKMSSS DPMLFF

Type	Start	End	Confidence
Cytoplasmic	1	138	0.84
Transmembrane Helix	139	162	0.86
Non-Cytoplasmic	163	241	0.81
Transmembrane Helix	242	261	0.77
Cytoplasmic	262	272	0.51
Transmembrane Helix	273	293	0.91
Non-Cytoplasmic	294	365	0.64
Transmembrane Helix	366	387	0.85
Cytoplasmic	388	392	0.61
Transmembrane Helix	393	414	0.88
Non-Cytoplasmic	415	419	0.59
Transmembrane Helix	420	443	0.87
Cytoplasmic	444	576	0.69