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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: eff-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.58
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPFEWSPQ FILLLLAVTT YGFPLEEKFD GLFRAEPPHC SKTPIVRAQT SQNAMSSIAR  60
   61 GMQMQFSIGL HTAVCFRLYE DTQLASQEIN DDENAGNQTS LLHTIRLEKL EHHHPITQRY 120
  121 TFGIPEVHAS CICECDATSS TCTAESHQFT ACPESDKSDE TSSCYRTFFP NQTPIGCSED 180
  181 DIPKLCCDVR FKPYKNMTFL AVKLEQPTTY ATFVYAAYDF VNGYWVEKDK TKIRSQLDGG 240
  241 TQDRHLDQKR RISLAVTAGG RASHQLETGM YFSRTSNGGE TEELRMQPLN EITDNNFDRL 300
  301 GWYRMDDSGH FHVNNGVVKM DDIHKAKVKN CKEQTYKSIL SANHYMPGHF NLTRPLEVIK 360
  361 PWIQSARIFD SSLRQAVVTH AEGTNLQISI HLDDEVESQN LVFFHNASRI RDFSGSIIVD 420
  421 SKSNRLFNLT VYEASGKIDG SVKMSTGFGS DTIHTFTAYV SDLHASNRSM IIPLPAIVGQ 480
  481 GARAICLRAD SMADIDKICH VIEYFESPLE IDLVEGKWHE MIGTCPTCNQ INFNGMMKFL 540
  541 NPAHWIKGIS SIGDGVMIAT DIVVYLGVLC ILYLLITKII VPLGQICLRI RRWCKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle