YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGFRIGMH FLASALRFLE PRVDDDFVDR LHYLYTSTMV LMFAVLVSAK QYVGHPIECF  60
   61 VPAQFTRAME QYTENYCWVQ NTYWVPFQDL IPHRLDDRER RQIGYYQWVP FVLAVAALTF 120
  121 HIPSSVWRML AGQSGLNAGL VLQLVCGDEN VDPVVRDKTV DIVARHIDDA LMYQRDHGAR 180
  181 RHSVYIFAIF KLGKFYGAYV SSVYIFIKAL HLANVILQFM LLNSFLQTSD YPMFGAHVLY 240
  241 DLFMGREWRD SGKFPRVTLC DFEIRVLGNV HRHTVQCVLV INMLTEKIFI FLWLWLTVLA 300
  301 IVTALNLIFW FIALVSNSCR EHFVSKHLDI QSDQISRFVH RFLRADGVFL LQMIASHSGN 360
  361 LMAAKVTEQL WMIFVRRSGK PVIEDKIEDR GSVRSTNGND WESHDDGKTS LKRGDSWHET 420
  421 SLPPPMPSLP TRTHYV

Type	Start	End	Confidence
Cytoplasmic	1	103	0.80
Transmembrane Helix	104	124	0.88
Non-Cytoplasmic	125	194	0.74
Transmembrane Helix	195	222	0.63
Cytoplasmic	223	290	0.72
Transmembrane Helix	291	313	0.95
Non-Cytoplasmic	314	436	0.65