YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLYYLAAIF KGLHPRVDDD FVDKLNYHYT SAIIFAFAII VSAKQYVGYP IQCWVPAQFT  60
   61 DAWEQYTENY CWVENTYYLP LTSAFPLEYG DRRARQISYY QWVPFVLALE ALCFYIPCIM 120
  121 WRGLLHWHSG INVQSLTQMA CDARMMDADA RAATVQTIAG HMEDALEIQR EVTDVSGMCV 180
  181 QKRWANYVTL LYVFIKMLYL GNVVLQVFML NSFLGTDNLF YGFHILRDLL NGREWEVSGN 240
  241 FPRVTMCDFE VRVLGNVHHH TVQCVLMINM FNEKIFLFLW FWYFMVAFVS AVSMFHWIII 300
  301 SFLPGQHMKF IRKYLRATDL ATDRQSVKKF VHKFLGYDGV FCMRMISAHA GDILATELIV 360
  361 ALWHNFNDRV RKIQFNSTES LNH

Type	Start	End	Confidence
Cytoplasmic	1	101	0.58
Transmembrane Helix	102	125	0.81
Non-Cytoplasmic	126	191	0.49
Transmembrane Helix	192	215	0.70
Cytoplasmic	216	275	0.53
Transmembrane Helix	276	300	0.88
Non-Cytoplasmic	301	344	0.56
Transmembrane Helix	345	363	0.48
Cytoplasmic	364	383	0.74