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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ncx-2
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLGCWLAV AFLVALAGLA DAGSNCSAAD ATRNCIDGLV IPIWRPFLDL TTGDRVLRGV  60
   61 LYFFVIAYMF LGISIVADRF MSSIEVITSM ERTIVVKRPG LDPMAVQVRI WNDTVSNLTL 120
  121 MALGSSAPEI LLSIIEVIAR GFEAGDLGPN TIVGSAAFNL FMIIAICVVV IPKGEIRRQK 180
  181 HLDVFCVTAT WSVFAYVWLY LILAFFSPGE IEIWEGALTF IFFPLTVFTA YMADIKLIQN 240
  241 KFLPHRYRRG SHGQMIATEA EEMKMLENGT QGDPALKAFE EHRQEFIELM REIRKQNPHI 300
  301 TPTELQKQAE YEMISRGPKS RAFYRVQATR RLIGGGDIVK KRIDKEHNKA LDALVQAQEK 360
  361 QSRDNTCKIF LDPAHYTVLE SVGSFDVVVG RDGGPDGLTV MVDYFTEDGS ANAGSDYIPV 420
  421 KGTLTFYPED KHQKVTIEVV DDDVFEEDEH FYLRLCNLRV RTKDGIIIDP TRIGGLPVAQ 480
  481 LEMPNTATIM ILDDDHAGVF GFEHDHFQVV ENCGHLSLQM KRHSGARGKV IIPFRTVEGT 540
  541 ASADKHFEMK EGEIVFEDNQ TEALVEIGIV DTEQYERSDY FYIELSPPIW AKKMNDLSRI 600
  601 QERFQRRMER KRGSSVASES KDSNTENGDD EVTTSLTPSQ LEIAEMGKPR LGEFTKCQIT 660
  661 IRESKEFQGI VDRMIKNANT RIMLGTHSWR EQFMEALVVS AGDDDDDEGE DGEDGEEKEP 720
  721 EEPGCMDYVM HVLTVPWKLT FATIPPTDYF GGWATFVVAI FMIGVLTAVV GDLASQFGCW 780
  781 VGLKDAVTAI SFVALGTSVP DTFASKVSAV QDKYADNAVG NVTGSNAVNV FLGIGIAWSM 840
  841 AAIYHWNQGT KFLVDPGNLG FSVLIFCTEA VLCIIVLVLR RNKKVGGELG GPIALRWMTA 900
  901 MFFASLWFMY LLLSALEAYC IIPGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle