YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ncx-2
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLGCWLAV AFLVALAGLA DAGSNCSAAD ATRNCIDGLV IPIWRPFLDL TTGDRVLRGV  60
   61 LYFFVIAYMF LGISIVADRF MSSIEVITSM ERTIVVKRPG LDPMAVQVRI WNDTVSNLTL 120
  121 MALGSSAPEI LLSIIEVIAR GFEAGDLGPN TIVGSAAFNL FMIIAICVVV IPKGEIRRQK 180
  181 HLDVFCVTAT WSVFAYVWLY LILAFFSPGE IEIWEGALTF IFFPLTVFTA YMADIKLIQN 240
  241 KFLPHRYRRG SHGQMIATEA EEMKMLENGT QGDPALKAFE EHRQEFIELM REIRKQNPHI 300
  301 TPTELQKQAE YEMISRGPKS RAFYRVQATR RLIGGGDIVK KRIDKEHNKA LDAAQEKQSR 360
  361 DNTCKIFLDP AHYTVLESVG SFDVVVGRDG GPDGLTVMVD YFTEDGSANA GSDYIPVKGT 420
  421 LTFYPEDKHQ KVTIEVVDDD VFEEDEHFYL RLCNLRVRTK DGIIIDPTRI GGLPVAQLEM 480
  481 PNTATIMILD DDHAGVFGFE HDHFQVVENC GHLSLQMKRH SGARGKVIIP FRTVEGTASA 540
  541 DKHFEMKEGE IVFEDNQTEA LVEIGIVDTE QYERSDYFYI ELSPPIWAKK MNDLSRIQER 600
  601 FQRRMERKRG SSVASESKDS NTENALAPAE KSTRAASVDL LQPSSDPRRS SQTNSPHLTS 660
  661 RFRNRLGSWI AGMKGGNGDD EVTTSLTPSQ LEIAEMGKPR LGEFTKCQIT IRESKEFQGI 720
  721 VDRMIKNANT RIMLGTHSWR EQFMEALVVS AGDDDDDEGE DGEDGEEKEP EEPGCMDYVM 780
  781 HVLTVPWKLT FATIPPTDYF GGWATFVVAI FMIGVLTAVV GDLASQFGCW VGLKDAVTAI 840
  841 SFVALGTSVP DTFASKVSAV QDKYADNAVG NVTGSNAVNV FLGIGIAWSM AAIYHWNQGT 900
  901 KFLVDPGNLG FSVLIFCTEA VLCIIVLVLR RNKKVGGELG GPIALRWMTA MFFASLWFMY 960
  961 LLLSALEAYC IIPGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle