YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE31879
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	26	0.86
Non-Cytoplasmic	27	31	0.69
Transmembrane Helix	32	52	0.93
Cytoplasmic	53	59	0.70
Transmembrane Helix	60	80	0.76
Non-Cytoplasmic	81	178	0.89
Transmembrane Helix	179	201	0.85
Cytoplasmic	202	216	0.76
Transmembrane Helix	217	238	0.90
Non-Cytoplasmic	239	268	0.93
Transmembrane Helix	269	289	0.90
Cytoplasmic	290	296	0.80
Transmembrane Helix	297	319	0.85
Non-Cytoplasmic	320	368	0.92
Transmembrane Helix	369	391	0.86
Cytoplasmic	392	403	0.91
Transmembrane Helix	404	424	0.91
Non-Cytoplasmic	425	436	0.69
Transmembrane Helix	437	454	0.97
Cytoplasmic	455	483	0.84
Transmembrane Helix	484	504	0.87
Non-Cytoplasmic	505	533	0.94
Transmembrane Helix	534	556	0.93
Cytoplasmic	557	608	0.96
Transmembrane Helix	609	631	0.93
Non-Cytoplasmic	632	643	0.93
Transmembrane Helix	644	664	0.89
Cytoplasmic	665	679	0.94
Transmembrane Helix	680	701	0.92
Non-Cytoplasmic	702	708	0.82
Transmembrane Helix	709	729	0.89
Cytoplasmic	730	756	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHVDQIYGY STIILAAAPL ASQLAISDIR WIFYFPFFAI PALTLMMIVG HLSKSAAVST  60
   61 FRKLAPISAG IGWALTWHVA EKLYAESLRA SQYVLYILFS IRPYLSWAVS CDHTYNTEYC 120
  121 HDFDDSNITV TEGKHHYPDN FWPAQEFNRY VIRNNAPITK MPAEWEPNMW YLGPSDETFT 180
  181 WAFPSIPLQT AHILTWLIIW FSISKYYDRL GDILLKGFLL VPIILYIAVI IGLTGFGFHF 240
  241 TTANIQAELE NSAISKDPFD FWADLRGSYR TSILIVDYST AFTGFVLLAT SRLRNGVSGL 300
  301 NALLLVPFMM IVPTMQTLIR LGCEGHVADQ QPNYKIYAST DETISFDLLP VCFATSHLGP 360
  361 VWSGLYYTAQ YLYGSLGPMI VYVSFIYQSF IDDFPIVQNS PKQCIGMIVL AFLMPSVFLY 420
  421 MPLGTKIAAF FRYTSQTALV QLTVFILIFF VYGWQKLEQD VMMTSQIPAR PSVLEYFTRA 480
  481 TSPIFTVLLF TVVPALICTK LVAVFDFLWA GNDVNKHISA GVQFLPFPTV IRQIVGYLVI 540
  541 FAPIIIMGVG AALTVYQMVF KHGLSWKDTL KPSPEWMAHA AVNPNKPRAH SLAYSIMNRL 600
  601 IFRRMSYKTA IFSLFLFETF IGILLVVFFF LNSSNLWVSS TRVANQYRSV LLLIFVVCHI 660
  661 WTLFEMRKCQ QYSQIEGERL SFYIGLATME TAMLNAYMWM YAGDHTGGID VPPLLIIMCN 720
  721 TCKLLIFLLE KIRRSEIPFM IFFQILSLNK DQNIKY