YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugtp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQNVHISH QDEDKEKLLP NDKDVEKADE SPSSSRPSFV FKCYVIASMT FIWTAYTLTI  60
   61 KYTRSTVNPD MMYSSTSVVL CAEILKLVIT FAMFYKECNF DSRQFSEQVS KYYINAPREL 120
  121 AKMSVPSFAY ALQNNLDFVG LSNLDAGLYQ VTTQLKVVST AFFMMLFLGR KFSTRRWMAI 180
  181 TLLMFGVAFV QMNNVSASEA NTKRETAENY IVGLSAVLAT CVTAGFAGVY FEKMLKDGGS 240
  241 TPFWIRNMQM YSCGVISASI ACLTDFSRIS DKGFFFGYTD KVWAVVILLG VGGLYISLVM 300
  301 RYLDNLYKSM ASAVSIILVV VLSMLIFPDI FIGMYFVLGT ICVVLAVLLY NSVNE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.87
Transmembrane Helix	40	60	0.83
Non-Cytoplasmic	61	72	0.71
Transmembrane Helix	73	95	0.66
Cytoplasmic	96	173	0.73
Transmembrane Helix	174	192	0.89
Non-Cytoplasmic	193	209	0.82
Transmembrane Helix	210	231	0.94
Cytoplasmic	232	247	0.84
Transmembrane Helix	248	269	0.84
Non-Cytoplasmic	270	281	0.81
Transmembrane Helix	282	299	0.96
Cytoplasmic	300	305	0.77
Transmembrane Helix	306	327	0.87
Non-Cytoplasmic	328	331	0.76
Transmembrane Helix	332	353	0.89
Cytoplasmic	354	355	0.83