YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gur-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITASNTLE FKWTSPRSSR SSFRTTTDAE QKISIDMSNT YCDQVLGPLY SYMMVLGLNH  60
   61 THSSARNTMF KWPLTIYNYL TLAILTAATI RRISQIKQKS ATNEEKDAAF HVLNPTFVLT 120
  121 LCHALLMFSG LAAGFLLLKL QKQREKMYHV LDQGLGRNRN EEHDSHHFKL NKLFISISFS 180
  181 FAAALSFVQI ATKMRYLDLP DTPDLINRKI YFVILEGYVI FIASSCISLV AILFFQLCRI 240
  241 LQFSIGQLIE EMVPKEKEEC PLPEQSLQQI HDVQIHYQEI SNAKLYIEQN FSFSLFYTYG 300
  301 CCIPLTCLLG YIAFRNGIQA DMAETFSVAI WLTNTMLALM LFSIPAFMIA EEGDKLLTAS 360
  361 FKMYHETLCE ERDLLVLSQM SFLSFQMHAT KLTLTAGNFF MMNRKIMISL FSAIFTYFLI 420
  421 LVQFDAEKER AGECNNQSRV LIVQPPV

Type	Start	End	Confidence
Cytoplasmic	1	73	0.80
Transmembrane Helix	74	93	0.80
Non-Cytoplasmic	94	116	0.78
Transmembrane Helix	117	138	0.91
Cytoplasmic	139	172	0.78
Transmembrane Helix	173	192	0.87
Non-Cytoplasmic	193	213	0.69
Transmembrane Helix	214	238	0.85
Cytoplasmic	239	292	0.73
Transmembrane Helix	293	314	0.90
Non-Cytoplasmic	315	327	0.63
Transmembrane Helix	328	350	0.89
Cytoplasmic	351	405	0.59
Transmembrane Helix	406	424	0.80
Non-Cytoplasmic	425	447	0.48