YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-112
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVETRVKAY RFVAYAAVTF SVVAVLSVCI TLPMVYNYVS HVKKGIHHEI RYCKGSAKDI  60
   61 LNEVSSIRSN RTARQASYGD SGAAGSAGAA GGSCSGCCLP GPAGPVGTPG KPGRPGKPGV 120
  121 AGLPGNPGRP PQAPCDPITP PPCKPCPQGP PGVQGPPGPA GDAGLDGQPG GPGQDGQPGQ 180
  181 PGPKGPPGVN GQPGAPGQDG NPGQDAPSEP LVPGEPGAPG EAGPQGPPGQ PGTPGQNGQP 240
  241 GQPGPKGPSG QPGQPGSDGN PGPAGQAGQA GSVGEKGICP KYCAIDGGIF FEDGTRR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.81
Transmembrane Helix	12	35	0.85
Non-Cytoplasmic	36	297	0.71