YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29895
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	56	0.92
Non-Cytoplasmic	57	89	0.94
Transmembrane Helix	90	112	0.92
Cytoplasmic	113	121	0.87
Transmembrane Helix	122	144	0.90
Non-Cytoplasmic	145	152	0.77
Transmembrane Helix	153	173	0.91
Cytoplasmic	174	184	0.85
Transmembrane Helix	185	204	0.88
Non-Cytoplasmic	205	213	0.71
Transmembrane Helix	214	234	0.93
Cytoplasmic	235	313	0.99
Transmembrane Helix	314	334	0.91
Non-Cytoplasmic	335	355	0.84
Transmembrane Helix	356	378	0.87
Cytoplasmic	379	385	0.91
Transmembrane Helix	386	407	0.93
Non-Cytoplasmic	408	413	0.85
Transmembrane Helix	414	437	0.88
Cytoplasmic	438	445	0.78
Transmembrane Helix	446	465	0.89
Non-Cytoplasmic	466	475	0.76
Transmembrane Helix	476	498	0.90
Cytoplasmic	499	526	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSHSNGPRG SIASDDSQAP LIEADDAQRR RVMPSLSIHI LSIALCLSSG FQQGYIASVL  60
   61 NQPYAQIEQF INSSWIERTG HPISDSTLHL LWSLLNVCFP IATIFGQFLA GWMCSQFGRK 120
  121 HTALIASFLY IPGALLCAAA KWCFPAFELL FVGRIIWSLA NGVNTVNATV WIVECAPPQI 180
  181 RGRMAAMQEF FMALGSLLTQ AVGVPFSTDE LWPYNFLPNC AVVVVSMVMF SWVAESPQFI 240
  241 MEKYNDVDRA RKALAQYHGV SEDDPSVESE IRICEQSIGK NKEKKKTAGG IESEHSGMEI 300
  301 MFMPWRAKDQ TSRLIRYCAW VGVMVKIAYV FTGARSLRGY STFILYTLSH FTYSQATWLS 360
  361 FATGLLRLPF TLVPVFLVDR LGRRPLIIVS MLVSFVSILV MIIAININGE LKYATFIGLT 420
  421 VLLLVNTCGI GSVSRFYAAE LVPRNLLLSS VSTLTMFEAL TKIGVEFAFY PTANVIGAQS 480
  481 LLLFLIPTGV FTVMCYLMCP ETSRMTVNEV LNNVAAKKKM DVVFPM